Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 3.1e-125 451.8 233 100.0
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 3.1e-125 451.8 233 100.0
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 3.1e-125 451.8 233 100.0
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 7.2e-122 440.7 235 97.0
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 7.2e-122 440.7 235 97.0
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 1.0e-115 420.2 233 92.3
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 1.3e-115 419.9 233 88.0
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 5.5e-114 414.5 235 91.9
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 1.5e-111 406.4 233 90.1
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 5.7e-111 404.4 233 85.8
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 9.8e-111 403.7 233 89.3
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 4.0e-96 355.1 233 73.8
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 8.9e-96 354.0 201 91.5
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.3e-91 339.3 231 71.9
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.9e-91 338.6 231 71.9
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 8.6e-91 337.4 231 72.3
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 1.1e-90 337.0 231 71.4
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.5e-90 335.9 231 71.0
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.3e-90 335.5 231 71.4
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.3e-90 334.3 242 69.8
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.3e-90 334.3 242 69.8
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 8.1e-89 330.9 233 71.7
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 1.4e-88 330.1 233 70.4
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 1.8e-88 329.7 237 71.3
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 1.8e-88 329.7 230 70.4
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 2.3e-88 329.3 230 71.3
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 2.0e-87 326.2 236 69.5
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 3.4e-87 325.5 233 69.5
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 4.4e-87 325.1 242 69.4
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 5.8e-87 324.7 229 73.4
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 5.8e-87 324.7 221 72.4
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 7.5e-87 324.3 234 69.2
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.3e-86 323.6 238 68.1
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 2.2e-86 322.8 236 67.8
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 3.7e-86 322.0 229 69.9
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 8.3e-86 320.9 233 69.5
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 8.3e-86 320.9 221 71.0
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.4e-85 320.1 223 72.6
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 1.4e-85 320.1 236 67.4
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 1.4e-85 320.1 237 69.2
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 1.4e-85 320.1 225 70.2
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 1.9e-85 319.7 233 69.1
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 7.1e-85 317.8 235 67.2
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 9.2e-85 317.4 233 67.0
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 1.2e-84 317.0 223 71.3
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 1.6e-84 316.6 230 70.0
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 1.6e-84 316.6 233 67.0
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 2.7e-84 315.8 221 70.1
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 3.5e-84 315.5 222 69.8
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 4.6e-84 315.1 232 66.8
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 6.0e-84 314.7 233 68.2
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 1.3e-83 313.5 221 68.8
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 1.3e-83 313.5 221 68.8
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 1.3e-83 313.5 224 69.2
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 3.0e-83 312.4 230 68.7
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 3.0e-83 312.4 225 68.9
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 3.9e-83 312.0 231 66.2
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 5.1e-83 311.6 232 66.4
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 5.1e-83 311.6 223 70.0
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 5.1e-83 311.6 221 68.3
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 5.1e-83 311.6 233 67.4
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 6.6e-83 311.2 222 68.9
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 8.6e-83 310.8 232 66.4
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 1.1e-82 310.5 223 66.4
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 1.1e-82 310.5 222 68.9
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 1.1e-82 310.5 243 67.9
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 1.9e-82 309.7 241 65.1
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.9e-82 309.7 221 67.9
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 3.3e-82 308.9 226 69.0
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 4.3e-82 308.5 243 65.4
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 7.3e-82 307.8 225 67.6
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 7.3e-82 307.8 222 68.5
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 7.3e-82 307.8 225 68.4
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 9.5e-82 307.4 233 66.5
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 9.5e-82 307.4 230 66.5
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 1.2e-81 307.0 227 67.4
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.6e-81 306.6 230 66.5
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 2.1e-81 306.2 221 67.9
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.8e-81 305.8 230 66.1
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 3.6e-81 305.4 233 67.0
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 5.2e-80 301.6 226 64.6
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 1.5e-79 300.1 236 64.4
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 2.0e-79 299.7 219 66.2
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 3.4e-79 298.9 222 66.7
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 5.8e-79 298.1 239 61.9
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 9.9e-79 297.4 216 69.4
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 1.7e-78 296.6 222 65.3
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 1.4e-77 293.5 199 72.9
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 7.1e-77 291.2 205 71.2
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 7.1e-77 291.2 225 63.6
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.2e-76 290.4 199 72.4
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 4.6e-76 288.5 199 70.4
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 6.0e-76 288.1 234 64.1
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 6.0e-76 288.1 212 65.1
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 1.1e-74 283.9 211 66.8
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 5.6e-74 281.6 226 61.5
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 9.6e-74 280.8 206 67.5
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 1.4e-72 276.9 222 61.3
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 2.0e-71 273.1 236 58.9
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 7.6e-71 271.2 209 65.1
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.3e-67 260.4 210 62.4
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 3.6e-65 252.3 244 55.7
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 4.8e-65 251.9 222 57.7
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 9.0e-64 247.7 217 57.6
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 1.2e-63 247.3 193 64.2
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 6.4e-62 241.5 203 60.1
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 2.7e-60 236.1 200 64.0
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 4.3e-58 228.8 220 55.5
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 1.3e-57 227.3 226 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 1.6e-57 226.9 216 54.6
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 9.0e-56 221.1 265 51.3
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.3e-54 217.2 148 71.6
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 1.3e-54 217.2 222 50.9
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 1.6e-49 200.3 142 71.1
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 1.4e-48 197.2 197 51.8
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 1.8e-48 196.8 180 56.1
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 7.9e-44 181.4 122 73.0
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 5.1e-27 125.6 212 36.8
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 1.5e-26 124.0 188 38.8
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 3.8e-22 109.4 255 32.9
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 4.2e-21 105.9 100 52.0
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 1.2e-20 104.4 188 37.8
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 4.4e-18 95.9 210 33.3
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 1.1e-13 81.3 48 75.0
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 2.7e-12 76.6 62 56.5
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.2e-10 71.2 49 69.4
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 1.1e-08 64.7 34 82.4
MCO01G267 Micromonas commoda HOM05D049972 ORTHO05D049270 5.3e-08 62.4 215 22.8
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 1.0e-06 58.2 172 31.4


User provided reference genes

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