Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 6.3e-244 847.0 442 100.0
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 6.3e-244 847.0 442 100.0
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 6.3e-244 847.0 442 100.0
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 2.1e-231 805.4 442 95.5
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 6.2e-231 803.9 442 95.2
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 3.4e-229 798.1 444 93.9
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 7.5e-221 770.4 455 88.6
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 2.4e-214 748.8 448 85.7
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 6.4e-212 740.7 460 85.2
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 5.4e-211 737.6 454 84.8
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 1.7e-209 732.6 459 83.2
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 2.5e-208 728.8 454 84.6
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 2.1e-207 725.7 452 83.0
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.9e-184 649.4 452 74.8
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 2.2e-148 529.6 463 62.0
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 4.4e-144 515.4 461 59.2
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 2.4e-142 509.6 471 57.1
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 4.1e-142 508.8 474 57.2
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 1.5e-139 500.4 469 56.1
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 8.3e-135 484.6 474 55.1
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 2.4e-134 483.0 480 55.0
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 4.1e-134 482.3 472 55.5
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 1.0e-132 477.6 472 53.4
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.3e-132 476.5 460 57.0
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 9.5e-131 471.1 458 56.6
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.4e-129 467.2 453 56.5
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 6.8e-129 464.9 453 56.3
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 3.7e-127 459.1 472 52.8
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 4.9e-127 458.8 462 54.1
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 1.8e-126 456.8 457 54.0
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 3.2e-126 456.1 462 53.5
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 5.4e-126 455.3 449 55.2
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 1.2e-125 454.1 460 52.8
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 2.7e-125 453.0 472 51.9
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 3.6e-122 442.6 465 53.5
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 3.1e-121 439.5 475 51.8
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 8.9e-121 438.0 225 98.2
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 9.8e-120 434.5 464 50.4
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 9.8e-120 434.5 462 51.1
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 1.7e-119 433.7 467 53.3
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 3.7e-119 432.6 471 49.3
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 4.9e-119 432.2 460 50.9
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 8.3e-119 431.4 464 50.9
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 3.2e-118 429.5 472 48.9
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 7.0e-118 428.3 468 49.6
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 1.2e-117 427.6 453 52.5
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.6e-117 427.2 464 50.4
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.7e-116 423.7 455 51.0
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 1.5e-115 420.6 448 51.3
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 9.5e-115 417.9 446 49.6
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 1.6e-114 417.2 465 50.8
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 2.1e-114 416.8 463 52.1
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 2.3e-113 413.3 461 48.6
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 3.1e-113 412.9 470 48.9
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 3.7e-111 406.0 463 51.2
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 6.4e-111 405.2 434 52.1
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 1.1e-110 404.4 467 47.3
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 3.2e-110 402.9 445 48.8
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.6e-109 400.6 427 52.2
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 1.6e-109 400.6 466 50.4
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 3.5e-109 399.4 461 50.3
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 6.6e-108 395.2 451 47.0
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 8.6e-108 394.8 467 49.9
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 1.1e-107 394.4 463 49.2
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 1.1e-107 394.4 451 46.8
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 1.9e-107 393.7 445 47.9
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 1.9e-107 393.7 457 47.7
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 2.5e-107 393.3 423 49.2
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 9.5e-107 391.3 461 47.3
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 5.2e-105 385.6 452 48.7
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 7.6e-104 381.7 455 47.0
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 4.9e-103 379.0 453 47.9
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 1.9e-102 377.1 436 49.1
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 4.1e-102 375.9 410 51.2
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 7.1e-102 375.2 392 53.8
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 1.0e-100 371.3 355 56.1
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 1.1e-99 367.9 396 52.0
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 3.3e-99 366.3 449 43.7
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 9.6e-99 364.8 366 55.7
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 6.2e-98 362.1 395 50.6
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 6.8e-97 358.6 405 47.4
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 2.0e-96 357.1 442 48.9
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.2e-95 353.6 398 50.0
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 4.9e-95 352.4 437 47.4
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.9e-94 350.5 458 43.4
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 5.1e-92 342.4 420 48.1
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 7.6e-88 328.6 458 46.1
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.8e-82 309.3 348 51.1
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 7.9e-77 292.0 602 32.9
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 7.9e-77 292.0 430 40.2
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 7.9e-69 265.4 228 56.1
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 2.3e-68 263.8 325 48.0
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 8.2e-66 255.4 262 56.1
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 2.1e-61 240.7 246 50.4
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.1e-60 236.1 447 39.1
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 9.7e-59 231.9 527 31.7
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 1.7e-47 194.5 142 66.2
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 6.1e-45 186.0 115 81.7
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 3.7e-42 176.8 462 28.6
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 1.3e-39 168.3 437 32.3
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.0e-36 158.7 291 36.8
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 1.7e-31 141.4 517 26.1
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 1.5e-30 138.3 447 29.1
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 2.1e-29 134.4 442 29.9
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 4.4e-27 126.7 247 36.4
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.8e-25 121.3 208 38.5
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 2.9e-23 114.0 110 60.9
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 1.8e-20 104.8 232 33.2
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 2.2e-18 97.8 134 44.0
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 2.2e-18 97.8 133 46.6
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 1.4e-17 95.1 96 55.2
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.0e-15 89.0 120 40.0
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 2.1e-13 81.3 110 46.4
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 6.1e-13 79.7 176 36.4
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.2e-08 65.5 124 28.2


User provided reference genes

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