Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 2.5e-161 572.0 284 100.0
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 7.4e-161 570.5 284 99.6
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 2.6e-142 508.8 271 92.6
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 2.1e-115 419.5 264 77.3
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 3.6e-115 418.7 207 99.5
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 6.8e-106 387.9 259 75.7
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 4.4e-105 385.2 259 74.1
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.6e-97 359.4 273 69.2
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 5.9e-94 348.2 272 66.2
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 7.8e-86 321.2 289 60.2
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 4.0e-82 308.9 203 76.4
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 1.1e-79 300.8 239 64.9
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.1e-78 296.6 267 57.3
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.7e-77 293.5 279 60.2
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 9.9e-73 277.7 265 57.7
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.5e-60 236.5 286 46.5
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 4.8e-59 232.3 290 44.8
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 5.8e-57 225.3 289 42.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.9e-56 223.0 268 45.1
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.9e-55 220.3 117 96.6
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 9.3e-55 218.0 289 42.2
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 9.3e-55 218.0 289 41.5
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.2e-54 217.6 288 44.1
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 2.7e-54 216.5 289 44.3
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 2.7e-54 216.5 280 45.0
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.5e-54 216.1 287 39.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 4.6e-54 215.7 286 44.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 4.6e-54 215.7 286 45.8
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 6.0e-54 215.3 281 44.1
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.0e-53 214.5 277 42.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 3.0e-53 213.0 281 43.4
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 6.6e-53 211.8 199 55.3
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.6e-53 211.8 292 42.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 6.6e-53 211.8 299 40.8
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 6.6e-53 211.8 284 45.4
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 6.6e-53 211.8 285 43.2
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.5e-52 210.7 296 41.6
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.9e-52 210.3 287 40.4
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.9e-52 210.3 254 46.1
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.9e-52 210.3 254 46.1
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.5e-52 209.9 283 42.8
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.3e-52 209.1 279 43.0
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 5.6e-52 208.8 283 43.1
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 7.4e-52 208.4 290 43.1
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.4e-52 208.4 254 45.7
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 7.4e-52 208.4 283 45.6
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.3e-51 207.6 295 40.3
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.3e-51 207.6 289 39.8
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.6e-51 207.2 282 40.4
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-51 206.8 264 44.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.8e-51 206.5 254 45.3
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.6e-51 206.1 283 41.0
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.4e-50 204.1 291 40.9
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.1e-50 203.0 301 41.9
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 6.9e-50 201.8 266 45.5
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 1.2e-49 201.1 285 41.8
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.2e-49 201.1 298 39.3
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.4e-49 199.5 281 40.9
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 3.4e-49 199.5 278 43.2
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 4.5e-49 199.1 284 41.9
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 9.9e-49 198.0 286 42.0
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 9.9e-49 198.0 291 40.5
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.3e-48 197.6 290 40.0
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 2.2e-48 196.8 120 84.2
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.9e-48 196.4 288 38.9
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 6.4e-48 195.3 292 41.1
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.1e-47 194.5 284 40.1
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.2e-47 193.0 288 40.6
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.1e-47 191.8 286 40.6
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 9.3e-47 191.4 284 40.1
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 2.7e-46 189.9 280 41.4
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.5e-46 189.5 283 39.9
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 4.6e-46 189.1 282 39.7
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 7.9e-46 188.3 294 39.1
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 2.3e-45 186.8 301 37.2
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 2.3e-45 186.8 284 39.4
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.9e-45 186.0 264 41.3
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 3.9e-45 186.0 287 39.7
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 6.7e-45 185.3 270 42.2
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 8.7e-45 184.9 288 38.2
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.1e-44 184.5 290 37.9
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.1e-44 184.5 297 38.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.1e-44 184.5 289 38.8
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 3.3e-44 183.0 250 41.2
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 4.3e-44 182.6 229 44.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.1e-43 180.3 289 37.7
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.8e-43 179.9 289 39.1
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.3e-40 171.0 205 46.3
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.9e-40 169.9 265 38.9
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.1e-38 163.7 281 34.9
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.3e-37 161.0 151 55.0
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 6.7e-37 158.7 159 50.9
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.7e-35 152.9 244 38.5
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 3.7e-35 152.9 233 39.5
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.2e-33 147.9 175 45.1
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.5e-33 147.5 216 40.7
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 6.5e-32 142.1 181 40.9
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 8.5e-32 141.7 307 34.5
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.5e-31 140.2 270 35.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.2e-31 139.8 196 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.2e-31 138.7 301 32.6
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.0e-29 134.8 272 33.1
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 3.3e-28 129.8 265 33.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 6.9e-26 122.1 218 34.4
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.2e-25 121.3 211 37.4
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.2e-24 117.1 136 45.6
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.8e-24 116.3 237 32.9
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 4.2e-23 112.8 112 51.8
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 8.8e-21 105.1 204 35.3
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 5.7e-20 102.4 125 45.6
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.2e-19 100.5 89 56.2
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 6.5e-16 89.0 252 25.0
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.1e-15 88.2 81 59.3
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.1e-15 88.2 81 59.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 4.2e-15 86.3 72 61.1
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.2e-15 86.3 296 26.7
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.6e-14 84.3 103 43.7
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.0e-13 81.6 114 36.8
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.1e-12 78.2 196 28.1
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.0e-08 65.1 137 32.1
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 3.8e-08 63.2 60 50.0
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 8.5e-08 62.0 57 49.1
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-07 61.6 60 48.3
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 9.4e-07 58.5 236 25.4
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.2e-06 58.2 56 46.4


User provided reference genes

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