Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 6.3e-211 737.3 394 100.0
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.7e-206 721.8 406 95.3
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 6.1e-206 720.7 406 94.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.7e-201 705.3 406 93.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.2e-200 702.2 406 93.3
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.4e-194 682.9 406 90.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.8e-190 668.7 401 89.3
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 7.0e-186 654.1 406 87.4
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 5.9e-185 651.0 406 86.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-184 649.4 406 87.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.3e-183 644.8 412 85.4
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 4.0e-181 638.3 405 84.0
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 7.3e-175 617.5 406 82.0
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 3.2e-170 602.1 400 79.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.3e-155 553.5 403 69.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-154 550.4 403 71.2
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.1e-154 550.4 403 71.2
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.1e-154 550.4 404 72.5
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.4e-154 549.3 520 63.1
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.4e-154 549.3 403 71.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.7e-153 545.8 403 71.2
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 6.0e-153 544.7 399 72.2
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.0e-152 543.9 406 70.7
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.3e-152 543.5 418 68.2
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.7e-152 543.1 399 71.2
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 5.1e-152 541.6 405 69.9
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 5.1e-152 541.6 405 69.9
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 5.1e-152 541.6 404 69.3
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.9e-151 539.7 403 68.7
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 3.3e-151 538.9 403 69.7
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 5.6e-151 538.1 403 70.2
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 7.3e-151 537.7 399 71.4
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 9.6e-151 537.3 404 68.3
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.6e-150 536.6 406 69.0
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.8e-150 535.8 397 70.8
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.6e-150 535.4 406 68.7
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 6.2e-150 534.6 404 68.6
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.1e-149 533.9 404 69.6
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.4e-149 533.5 402 68.9
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.4e-149 533.5 403 69.7
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 5.3e-149 531.6 403 67.2
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.2e-148 530.4 404 67.3
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.2e-148 530.4 406 70.2
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 2.0e-148 529.6 398 69.6
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.0e-148 529.6 409 68.7
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 2.0e-148 529.6 404 69.3
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.6e-148 529.3 405 69.6
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 3.4e-148 528.9 409 68.5
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 3.4e-148 528.9 407 67.6
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 4.5e-148 528.5 404 67.6
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 4.5e-148 528.5 406 69.5
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 4.5e-148 528.5 409 68.7
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.8e-148 528.1 409 68.7
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.6e-148 527.7 406 68.0
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.2e-147 526.2 399 69.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.9e-147 525.8 404 68.6
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 2.9e-147 525.8 400 70.2
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 3.8e-147 525.4 405 69.4
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.9e-147 525.0 409 68.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.9e-147 525.0 409 68.7
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 8.4e-147 524.2 405 65.9
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.1e-146 523.9 407 68.8
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.4e-146 523.5 401 68.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.4e-146 523.5 409 68.9
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.2e-146 522.3 403 67.0
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.4e-146 521.5 409 68.7
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 7.1e-146 521.2 401 68.3
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 9.3e-146 520.8 402 68.2
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 9.3e-146 520.8 404 66.3
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.2e-145 520.4 400 67.5
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.6e-145 520.0 406 68.5
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.7e-145 519.2 398 68.8
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 6.0e-145 518.1 406 66.7
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 6.0e-145 518.1 406 66.7
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.0e-144 517.3 399 67.4
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.0e-144 517.3 405 68.1
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 3.0e-144 515.8 402 67.9
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.5e-143 513.5 401 66.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 4.3e-143 511.9 403 65.5
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 5.6e-143 511.5 388 67.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 9.6e-143 510.8 402 68.9
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.3e-142 510.4 401 65.8
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 6.2e-142 508.1 401 68.1
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 3.1e-141 505.8 403 66.7
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.3e-141 505.0 404 67.1
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 5.3e-141 505.0 405 68.4
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.5e-140 503.4 411 64.7
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.8e-140 501.5 406 72.9
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 9.9e-140 500.7 402 67.2
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.7e-139 500.0 436 62.2
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.1e-138 497.3 403 64.5
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.9e-138 496.5 405 66.4
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 5.5e-138 495.0 400 64.5
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 5.5e-138 495.0 392 64.8
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 7.1e-138 494.6 392 64.5
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.2e-137 493.8 405 64.4
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.2e-137 493.8 398 65.6
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.2e-137 493.8 406 65.5
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.2e-137 493.8 395 65.6
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.5e-137 492.3 395 65.6
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 6.0e-137 491.5 396 63.6
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.8e-136 490.0 447 58.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 8.7e-136 487.6 407 61.7
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.6e-135 485.0 404 62.4
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.6e-134 483.4 410 63.7
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 3.7e-134 482.3 453 60.9
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.0e-133 477.6 406 62.8
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.5e-132 475.3 427 58.8
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 4.5e-132 475.3 443 61.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.4e-130 470.3 407 60.2
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.9e-130 469.9 403 63.8
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.1e-129 466.5 400 62.5
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 7.9e-129 464.5 402 60.2
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.4e-127 458.0 398 63.3
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 3.1e-125 452.6 403 63.0
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.1e-125 452.2 396 59.3
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 4.1e-125 452.2 407 61.9
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.5e-124 450.3 399 57.6
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 6.1e-121 438.3 416 59.9
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 8.7e-120 434.5 347 63.4
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.5e-119 433.7 364 62.1
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 4.3e-119 432.2 318 70.1
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 3.2e-114 416.0 331 68.3
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.8e-112 410.2 400 54.8
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.8e-112 410.2 400 54.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 7.4e-111 404.8 405 63.7
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.4e-109 400.6 396 54.3
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.9e-107 392.9 435 54.5
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-101 374.4 291 67.0
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.5e-100 369.4 442 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 2.9e-91 339.7 392 47.7
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 4.0e-80 302.8 403 49.9
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 6.8e-80 302.0 408 43.4
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 1.0e-75 288.1 271 66.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 8.9e-72 275.0 203 70.4
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.3e-66 255.4 151 89.4
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 4.7e-65 252.7 430 40.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.2e-63 248.1 359 42.9
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.4e-55 219.5 301 44.2
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.2e-54 217.2 147 83.0
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.3e-30 138.3 105 66.7
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.7e-30 137.9 409 32.3
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.9e-30 136.3 187 50.3
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.5e-26 124.8 128 57.8
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.1e-24 117.1 100 54.0
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 5.8e-23 112.8 426 25.8
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.5e-20 103.6 73 69.9
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 6.7e-19 99.4 444 25.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-17 93.6 60 73.3
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 4.9e-14 83.2 62 77.4
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 5.5e-13 79.7 68 57.4
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.2e-12 78.6 372 25.5
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.3e-11 75.1 59 59.3
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 3.9e-11 73.6 86 53.5
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.3e-09 68.6 84 53.6
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 6.9e-08 62.8 61 55.7
A03p38390 Brassica napus HOM05D065861 ORTHO05D101305 2.0e-07 61.2 36 88.9
A06p47450 Brassica napus HOM05D065861 ORTHO05D102613 2.0e-07 61.2 36 88.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.4e-07 60.5 69 47.8
AL8G27630 Arabidopsis lyrata HOM05D004576 ORTHO05D079524 3.8e-06 57.0 111 40.5
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 8.5e-06 55.8 40 65.0


User provided reference genes

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