Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20500 Brassica carinata HOM05D012238 ORTHO05D016114 9.9e-109 396.7 192 100.0
C09p42890 Brassica napus HOM05D012238 ORTHO05D016114 3.5e-66 255.4 177 79.1
BolC9t57159H Brassica oleracea HOM05D012238 ORTHO05D016114 2.5e-51 206.1 146 74.7
C02p31510 Brassica napus HOM05D012238 ORTHO05D016114 5.2e-17 92.0 48 91.7
A02p40270 Brassica napus HOM05D012238 ORTHO05D016114 6.8e-17 91.7 43 100.0
BraA02t08996Z Brassica rapa HOM05D012238 ORTHO05D016114 6.8e-17 91.7 43 100.0
C01p28650 Brassica napus HOM05D012238 ORTHO05D016114 1.2e-16 90.9 48 89.6
BolC1t02792H Brassica oleracea HOM05D012238 ORTHO05D016114 1.2e-16 90.9 48 89.6
C04p29370 Brassica napus HOM05D012238 ORTHO05D016114 7.5e-16 88.2 43 95.3
BolC2t09437H Brassica oleracea HOM05D012238 ORTHO05D016114 2.7e-13 79.7 38 97.4
BcaB08g35179 Brassica carinata HOM05D060190 ORTHO05D092674 6.6e-12 75.1 65 52.3
A03p35510 Brassica napus HOM05D012238 ORTHO05D016114 1.4e-09 67.4 31 100.0
Hma1.2p1_0271F.1_g108730 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 2.9e-07 59.7 43 62.8
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 3.7e-07 59.3 50 62.0
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
C01p03570 Brassica napus HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BolC1t00347H Brassica oleracea HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 4.9e-07 58.9 36 77.8
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 6.4e-07 58.5 36 75.0
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 6.4e-07 58.5 36 75.0
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 6.4e-07 58.5 59 52.5
Sp6g22640 Schrenkiella parvula HOM05D001368 ORTHO05D003108 6.4e-07 58.5 51 60.8
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 1.1e-06 57.8 35 71.4
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 1.4e-06 57.4 35 77.1
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 1.4e-06 57.4 36 72.2
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 1.4e-06 57.4 35 77.1
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 1.4e-06 57.4 35 77.1
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 1.4e-06 57.4 35 77.1
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 1.4e-06 57.4 36 72.2
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 1.4e-06 57.4 35 77.1
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 1.4e-06 57.4 50 60.0
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 1.4e-06 57.4 35 77.1
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 1.4e-06 57.4 36 72.2
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 1.9e-06 57.0 50 60.0
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 1.9e-06 57.0 50 58.0
C03p20580 Brassica napus HOM05D001098 ORTHO05D012826 2.4e-06 56.6 48 56.2
BolC3t14466H Brassica oleracea HOM05D001098 ORTHO05D012826 2.4e-06 56.6 48 56.2
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 2.4e-06 56.6 36 66.7
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 2.4e-06 56.6 46 54.3
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 2.4e-06 56.6 50 60.0
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 2.4e-06 56.6 59 49.2
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 3.2e-06 56.2 35 74.3
Cc09_g10880 Coffea canephora HOM05D001098 ORTHO05D002527 3.2e-06 56.2 50 56.0
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 3.2e-06 56.2 50 60.0
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 4.1e-06 55.8 35 71.4
DCAR_006385 Daucus carota HOM05D001098 ORTHO05D002527 4.1e-06 55.8 35 71.4
Duzib132G1111 Durio zibethinus HOM05D001098 ORTHO05D002527 4.1e-06 55.8 35 71.4
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 4.1e-06 55.8 35 71.4
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 4.1e-06 55.8 50 56.0
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 4.1e-06 55.8 35 71.4
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 4.1e-06 55.8 50 58.0
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 4.1e-06 55.8 50 52.0
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 4.1e-06 55.8 50 56.0
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 4.1e-06 55.8 50 56.0
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 4.1e-06 55.8 50 56.0
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 4.1e-06 55.8 35 71.4
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 4.1e-06 55.8 35 68.6
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 5.4e-06 55.5 46 50.0
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 5.4e-06 55.5 36 63.9
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 5.4e-06 55.5 36 63.9
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 5.4e-06 55.5 59 49.2
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 5.4e-06 55.5 35 68.6
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 5.4e-06 55.5 59 49.2
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 5.4e-06 55.5 50 58.0
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 5.4e-06 55.5 50 58.0
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 5.4e-06 55.5 50 56.0
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 5.4e-06 55.5 36 63.9
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 5.4e-06 55.5 50 58.0
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 5.4e-06 55.5 38 63.2
ATR0057G016 Amborella trichopoda HOM05D001098 ORTHO05D002527 7.0e-06 55.1 35 74.3
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 7.0e-06 55.1 50 58.0
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 7.0e-06 55.1 59 47.5
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 7.0e-06 55.1 36 61.1
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 9.2e-06 54.7 46 50.0
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 9.2e-06 54.7 46 50.0
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 9.2e-06 54.7 50 54.0
CSS0007326 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 9.2e-06 54.7 50 56.0
CDE10G0149 Ceratophyllum demersum HOM05D001098 ORTHO05D002527 9.2e-06 54.7 36 66.7
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 9.2e-06 54.7 50 56.0
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 9.2e-06 54.7 50 54.0
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 9.2e-06 54.7 35 68.6
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 9.2e-06 54.7 35 68.6
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 9.2e-06 54.7 35 71.4
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 9.2e-06 54.7 35 71.4


User provided reference genes

Program Settings