Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 3.4e-101 371.7 193 100.0
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.2e-90 336.7 193 92.2
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 6.5e-84 314.3 182 91.8
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 5.1e-65 251.5 219 67.1
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 9.7e-64 247.3 215 66.5
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 1.7e-63 246.5 209 67.9
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.2e-63 246.1 219 65.3
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 1.2e-61 240.4 219 64.8
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 2.0e-61 239.6 216 63.9
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 4.5e-61 238.4 214 65.0
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 4.5e-61 238.4 214 65.0
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 4.5e-61 238.4 214 65.0
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 7.2e-59 231.1 214 63.1
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 7.2e-59 231.1 214 63.1
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.6e-58 229.9 215 63.3
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.6e-56 222.6 220 59.5
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.7e-47 192.2 202 57.4
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.8e-47 191.8 202 56.9
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 1.3e-44 183.7 184 58.2
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 2.3e-41 172.9 210 50.0
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 6.8e-41 171.4 228 46.5
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.2e-40 170.6 228 47.8
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.5e-40 170.2 215 48.4
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 2.0e-40 169.9 219 47.0
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 3.4e-40 169.1 180 53.3
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 9.8e-40 167.5 217 47.9
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.3e-39 167.2 211 48.8
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.7e-39 166.8 180 53.3
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 2.2e-39 166.4 228 46.1
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 2.2e-39 166.4 227 47.1
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 3.7e-39 165.6 230 46.5
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 6.3e-39 164.9 180 52.8
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 8.3e-39 164.5 180 53.3
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.4e-38 162.9 225 47.6
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 2.4e-38 162.9 222 46.4
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 3.1e-38 162.5 213 50.2
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 3.1e-38 162.5 175 51.4
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 7.0e-38 161.4 236 44.9
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 7.0e-38 161.4 180 52.2
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 9.1e-38 161.0 212 48.1
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 9.1e-38 161.0 180 52.8
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 1.2e-37 160.6 180 50.6
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.2e-37 160.6 175 52.0
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.2e-37 160.6 180 51.7
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.2e-37 160.6 210 46.7
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.6e-37 160.2 210 46.7
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 2.0e-37 159.8 212 47.6
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.7e-37 159.5 213 46.5
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.7e-37 159.5 210 45.7
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 3.5e-37 159.1 221 47.5
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 3.5e-37 159.1 180 53.9
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 7.7e-37 157.9 199 48.2
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 7.7e-37 157.9 203 45.8
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 7.7e-37 157.9 180 49.4
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.0e-36 157.5 224 44.2
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.0e-36 157.5 180 50.6
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.7e-36 156.8 214 46.7
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 1.7e-36 156.8 223 44.8
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.7e-36 156.8 200 47.5
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.7e-36 156.8 224 46.0
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.7e-36 156.8 224 46.0
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.7e-36 156.8 216 46.3
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 1.7e-36 156.8 175 50.3
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.3e-36 156.4 212 47.6
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 2.9e-36 156.0 205 45.4
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 3.8e-36 155.6 180 48.9
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.8e-36 155.6 224 45.5
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 5.0e-36 155.2 231 45.5
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.0e-36 155.2 224 45.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.0e-36 155.2 212 47.2
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 5.0e-36 155.2 176 52.3
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.6e-36 154.5 224 45.5
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 8.6e-36 154.5 180 50.0
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.1e-35 154.1 213 46.0
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 4.2e-35 152.1 214 44.4
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 9.5e-35 151.0 210 45.7
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.6e-34 150.2 203 47.3
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 2.8e-34 149.4 227 44.1
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.8e-34 149.4 230 43.5
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.8e-33 146.7 202 45.0
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 6.8e-33 144.8 200 45.0
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 8.9e-33 144.4 215 42.3
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.5e-32 143.7 180 45.6
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.5e-32 143.7 220 42.3
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.5e-32 143.7 220 42.3
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 2.0e-32 143.3 238 41.2
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.0e-32 143.3 196 45.9
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 2.0e-32 143.3 231 43.3
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 5.7e-32 141.7 175 46.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 7.5e-32 141.4 180 45.0
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.7e-31 140.2 200 42.5
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.7e-31 140.2 200 45.0
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.7e-31 140.2 224 43.8
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 3.2e-30 136.0 187 43.3
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.2e-30 136.0 176 43.2
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 4.1e-30 135.6 137 51.1
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 5.4e-30 135.2 218 44.0
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 7.0e-30 134.8 211 45.0
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 9.2e-30 134.4 97 76.3
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 9.2e-30 134.4 204 43.6
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 9.2e-30 134.4 194 43.3
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.6e-29 133.7 128 55.5
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 4.6e-29 132.1 179 41.3
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.3e-28 130.6 162 47.5
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 2.9e-28 129.4 142 49.3
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 3.9e-28 129.0 191 43.5
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 6.6e-28 128.3 174 42.0
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.9e-27 126.7 213 38.0
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.9e-27 126.7 213 38.0
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 3.3e-27 125.9 153 45.8
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.3e-27 125.6 141 50.4
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 4.3e-27 125.6 180 41.7
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.3e-27 125.6 150 49.3
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 4.3e-27 125.6 161 46.6
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.3e-27 124.8 213 37.6
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 7.3e-27 124.8 150 49.3
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 1.2e-26 124.0 138 47.1
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.6e-26 123.6 153 45.8
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 2.8e-26 122.9 161 45.3
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.8e-26 122.9 150 48.0
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 8.0e-26 121.3 150 47.3
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 8.0e-26 121.3 133 48.9
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.4e-25 120.6 131 49.6
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 4.0e-25 119.0 153 46.4
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 2.0e-24 116.7 137 47.4
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.6e-24 116.3 193 40.4
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 3.4e-24 115.9 174 40.8
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 3.4e-24 115.9 153 45.8
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 7.5e-24 114.8 150 44.7
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 7.5e-24 114.8 142 45.1
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 9.8e-24 114.4 157 41.4
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.7e-23 113.6 171 42.1
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.2e-23 113.2 118 53.4
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 2.2e-23 113.2 153 44.4
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.9e-23 112.8 158 41.8
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.9e-19 100.1 106 50.9
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 5.6e-19 98.6 106 50.0
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 5.2e-17 92.0 136 39.0
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.5e-16 90.5 211 33.6
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 2.6e-16 89.7 167 34.1
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 3.4e-16 89.4 139 39.6
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 3.4e-16 89.4 139 39.6
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 9.8e-16 87.8 177 33.9
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 6.4e-15 85.1 181 33.7
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.1e-14 84.3 107 44.9
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 4.7e-10 68.9 123 36.6
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 1.8e-09 67.0 147 29.9


User provided reference genes

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