Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20459 Brassica carinata HOM05D007765 ORTHO05D009826 5.3e-44 180.6 92 100.0
C03p88840 Brassica napus HOM05D007765 ORTHO05D009826 2.6e-38 161.8 82 100.0
BolC3t21196H Brassica oleracea HOM05D007765 ORTHO05D009826 2.6e-38 161.8 82 100.0
A08p19380 Brassica napus HOM05D007765 ORTHO05D009826 1.7e-37 159.1 82 97.6
BraA08t33899Z Brassica rapa HOM05D007765 ORTHO05D009826 1.7e-37 159.1 82 97.6
BcaNung04419 Brassica carinata HOM05D007765 ORTHO05D009826 2.0e-30 135.6 82 82.9
BcaB03g12635 Brassica carinata HOM05D007765 ORTHO05D009826 5.7e-30 134.0 82 82.9
BcaC09g51800 Brassica carinata HOM05D007765 ORTHO05D009826 3.7e-29 131.3 82 81.7
C01p08880 Brassica napus HOM05D007765 ORTHO05D009826 3.7e-29 131.3 82 81.7
BolC1t00878H Brassica oleracea HOM05D007765 ORTHO05D009826 3.7e-29 131.3 82 81.7
A01p07960 Brassica napus HOM05D007765 ORTHO05D009826 4.1e-28 127.9 82 80.5
BraA01t00741Z Brassica rapa HOM05D007765 ORTHO05D009826 4.1e-28 127.9 82 80.5
Sp7g28050 Schrenkiella parvula HOM05D007765 ORTHO05D009826 9.1e-28 126.7 82 78.0
CARHR238080 Cardamine hirsuta HOM05D007765 ORTHO05D009826 2.9e-26 121.7 82 78.0
Thhalv10026906m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 1.5e-25 119.4 82 76.8
AT4G30180 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 2.7e-24 115.2 82 76.8
AL7G22010 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 6.1e-24 114.0 82 75.6
Carub.0007s1043 Capsella rubella HOM05D007765 ORTHO05D009826 8.0e-24 113.6 82 75.6
AL3G52940 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 1.8e-20 102.4 86 64.0
AT2G18969 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 2.4e-20 102.1 86 64.0
Carub.0003s3320 Capsella rubella HOM05D007765 ORTHO05D009826 2.4e-20 102.1 86 64.0
A09p12150 Brassica napus HOM05D007765 ORTHO05D009826 1.2e-19 99.8 86 64.0
BolC9t54340H Brassica oleracea HOM05D007765 ORTHO05D009826 1.2e-19 99.8 86 64.0
C09p14370 Brassica napus HOM05D007765 ORTHO05D009826 3.5e-19 98.2 86 62.8
BraA09t36859Z Brassica rapa HOM05D007765 ORTHO05D009826 3.5e-19 98.2 86 62.8
BcaB07g31628 Brassica carinata HOM05D007765 ORTHO05D009826 1.0e-18 96.7 86 60.5
BcaC04g22872 Brassica carinata HOM05D007765 ORTHO05D009826 1.0e-18 96.7 86 62.8
Sp3g32420 Schrenkiella parvula HOM05D007765 ORTHO05D009826 1.0e-18 96.7 86 60.5
CARHR109510 Cardamine hirsuta HOM05D007765 ORTHO05D009826 5.5e-17 90.9 89 58.4
Thhalv10022885m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 6.1e-16 87.4 86 55.8
THA.LOC104803946 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 5.2e-15 84.3 92 54.3
THA.LOC104819971 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 1.3e-13 79.7 81 56.8
THA.LOC104803486 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 3.7e-13 78.2 87 55.2
CiPaw.07G194200 Carya illinoinensis HOM05D007765 ORTHO05D009826 2.9e-10 68.6 90 46.7
QL11p005142 Quercus lobata HOM05D007765 ORTHO05D009826 2.5e-09 65.5 78 44.9
arahy.Tifrunner.gnm1.ann1.YM1G3Q Arachis hypogaea HOM05D007765 ORTHO05D009826 1.2e-08 63.2 77 42.9
Phvul.003G143700 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 1.2e-08 63.2 90 47.8
Dinv41219 Davidia involucrata HOM05D007765 ORTHO05D009826 3.6e-08 61.6 81 45.7
Glyma.17G061700 Glycine max HOM05D007765 ORTHO05D009826 3.6e-08 61.6 89 46.1
Medtr4g127700 Medicago truncatula HOM05D007765 ORTHO05D009826 4.7e-08 61.2 80 45.0
Ca_21240_v3 Cicer arietinum L. HOM05D007139 ORTHO05D009171 1.4e-07 59.7 89 42.7
TPR.G5381 Trifolium pratense HOM05D007765 ORTHO05D009826 1.8e-07 59.3 91 40.7
Duzib150G0923 Durio zibethinus HOM05D007765 ORTHO05D009826 2.3e-07 58.9 81 44.4
arahy.Tifrunner.gnm1.ann1.8SXC5S Arachis hypogaea HOM05D007765 ORTHO05D009826 4.0e-07 58.2 75 44.0
Aa31LG8G16060 Aethionema arabicum HOM05D007765 ORTHO05D009826 5.2e-07 57.8 82 41.5
Psat1g146600 Pisum sativum HOM05D007765 ORTHO05D009826 5.2e-07 57.8 77 40.3
Gohir.D13G216400 Gossypium hirsutum HOM05D007765 ORTHO05D009826 8.9e-07 57.0 79 39.2
Dinv19560 Davidia involucrata HOM05D007765 ORTHO05D009826 1.2e-06 56.6 79 43.0
Lj6g0023329 Lotus japonicus HOM05D007765 ORTHO05D009826 1.5e-06 56.2 74 43.2
TAR383G0713 Trochodendron aralioides HOM05D007765 ORTHO05D009826 2.0e-06 55.8 80 42.5
Gorai.013G246700 Gossypium raimondii HOM05D007765 ORTHO05D009826 2.6e-06 55.5 79 39.2
Glyma.13G098000 Glycine max HOM05D007765 ORTHO05D009826 3.4e-06 55.1 82 43.9
TPR.G9240 Trifolium pratense HOM05D007765 ORTHO05D009826 4.4e-06 54.7 82 41.5
Phvul.009G238800 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 5.7e-06 54.3 72 41.7
COL.COLO4_36375 Corchorus olitorius HOM05D007765 ORTHO05D009826 7.5e-06 53.9 83 36.1
Gohir.A13G212300 Gossypium hirsutum HOM05D007765 ORTHO05D009826 9.8e-06 53.5 79 39.2


User provided reference genes

Program Settings