Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.2e-107 394.0 355 100.0
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.2e-107 394.0 355 100.0
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.5e-105 386.3 355 98.9
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 5.9e-99 365.2 359 93.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 4.1e-92 342.4 355 93.5
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 4.1e-92 342.4 359 90.8
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 7.0e-92 341.7 355 91.3
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 6.5e-90 335.1 360 90.0
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.6e-88 330.5 175 96.0
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.6e-88 330.5 175 96.0
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 2.6e-86 323.2 358 86.9
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 7.0e-84 315.1 203 81.8
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.1e-76 291.2 174 82.2
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 8.8e-71 271.6 175 76.6
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.2e-70 271.2 174 77.6
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 5.7e-70 268.9 174 77.6
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.7e-70 268.9 174 77.0
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.7e-70 268.9 174 77.0
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 5.7e-70 268.9 174 77.0
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 9.8e-70 268.1 174 76.4
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 1.3e-69 267.7 171 78.4
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 4.8e-69 265.8 174 76.4
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.1e-68 264.6 174 77.0
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.1e-68 264.6 174 74.7
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 1.4e-68 264.2 175 76.0
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 1.4e-68 264.2 174 75.3
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.8e-68 263.8 171 77.2
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.4e-68 263.5 173 75.1
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.4e-68 263.5 174 76.4
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 7.0e-68 261.9 175 74.3
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 9.1e-68 261.5 169 76.9
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.6e-67 260.8 174 74.1
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.6e-67 260.8 174 74.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.6e-67 260.8 171 76.6
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.6e-67 260.8 174 73.6
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 2.0e-67 260.4 173 74.0
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 2.0e-67 260.4 167 77.8
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.7e-67 260.0 173 76.3
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.7e-67 260.0 171 76.6
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.5e-67 259.6 167 77.2
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 3.5e-67 259.6 174 74.7
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 4.5e-67 259.2 174 73.0
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 7.7e-67 258.5 174 74.1
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.0e-66 258.1 170 75.3
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.3e-66 257.7 174 73.0
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.7e-66 257.3 167 76.6
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.7e-66 257.3 171 76.0
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 2.3e-66 256.9 173 73.4
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.9e-66 256.5 174 73.6
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 2.9e-66 256.5 174 74.1
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 2.9e-66 256.5 172 76.7
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 3.8e-66 256.1 174 73.6
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 3.8e-66 256.1 170 74.1
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 6.6e-66 255.4 171 74.9
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.5e-65 254.2 174 74.1
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 1.9e-65 253.8 174 72.4
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.9e-65 253.8 174 73.6
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 2.5e-65 253.4 171 74.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 3.3e-65 253.1 173 72.8
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 4.2e-65 252.7 170 73.5
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 5.5e-65 252.3 171 72.5
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 7.2e-65 251.9 171 71.9
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.6e-64 250.8 170 72.9
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 2.8e-64 250.0 171 74.3
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 6.1e-64 248.8 167 72.5
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 8.0e-64 248.4 175 71.4
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 2.3e-63 246.9 173 71.7
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.2e-62 244.6 168 72.0
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.2e-62 244.6 168 72.0
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.5e-62 244.2 170 72.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.3e-61 241.1 206 63.6
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.7e-61 240.7 168 72.6
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 4.9e-61 239.2 174 69.0
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.6e-59 234.2 171 71.9
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.7e-59 233.4 171 70.8
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 1.0e-58 231.5 171 70.8
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 2.9e-58 229.9 160 75.0
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 8.6e-58 228.4 171 66.1
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 2.5e-57 226.9 220 57.3
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 2.5e-57 226.9 168 66.1
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 2.5e-57 226.9 171 65.5
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 5.6e-57 225.7 169 69.8
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 2.1e-56 223.8 174 65.5
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 8.0e-56 221.9 174 65.5
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.0e-55 221.5 150 74.7
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.8e-55 220.7 193 61.1
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 6.8e-55 218.8 155 72.3
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.5e-54 217.6 149 73.8
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 4.4e-54 216.1 155 70.3
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 2.9e-53 213.4 170 61.8
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.1e-52 209.5 192 59.4
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.0e-50 204.9 168 63.1
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 1.3e-50 204.5 152 70.4
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 2.3e-50 203.8 175 61.7
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 3.9e-50 203.0 150 70.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.2e-44 183.3 131 68.7
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 9.2e-44 181.8 149 61.7
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.1e-39 166.8 118 73.7
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 5.2e-31 139.4 105 70.5
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.2e-30 138.3 105 69.5
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 9.9e-30 135.2 73 82.2
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.6e-27 127.9 163 42.9
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 2.7e-27 127.1 93 75.3
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 3.9e-26 123.2 124 58.9
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.5e-25 120.6 75 85.3
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.6e-25 119.4 65 83.1
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 3.6e-24 116.7 69 75.4
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 6.9e-23 112.5 178 37.6
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.4e-20 104.0 92 59.8
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 6.0e-19 99.4 66 63.6
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 2.0e-14 84.3 89 56.2
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.7e-13 81.3 85 56.5
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.8e-13 80.1 85 55.3
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 1.1e-12 78.6 69 63.8
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.4e-12 77.4 64 65.6
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 7.4e-09 65.9 51 66.7
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.4e-07 61.6 32 81.2
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 2.4e-07 60.8 67 50.7
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 2.6e-06 57.4 36 66.7
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 3.4e-06 57.0 40 67.5


User provided reference genes

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