Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20411 Brassica carinata HOM05D006845 ORTHO05D009300 4.6e-252 874.0 423 100.0
C09p43870 Brassica napus HOM05D006845 ORTHO05D009300 1.3e-249 865.9 423 99.1
A10p11250 Brassica napus HOM05D006845 ORTHO05D009300 4.8e-249 864.0 423 98.8
BcaB08g35745 Brassica carinata HOM05D006845 ORTHO05D009300 7.2e-245 850.1 423 96.7
Sp6g15920 Schrenkiella parvula HOM05D006845 ORTHO05D009300 4.4e-242 840.9 423 95.5
Thhalv10013651m.g Eutrema salsugineum HOM05D006845 ORTHO05D009300 2.6e-239 831.6 423 93.6
AL8G28920 Arabidopsis lyrata HOM05D006845 ORTHO05D009300 5.9e-239 830.5 423 94.6
AT5G53860 Arabidopsis thaliana HOM05D006845 ORTHO05D009300 5.0e-238 827.4 423 94.1
Carub.0008s1415 Capsella rubella HOM05D006845 ORTHO05D009300 1.9e-237 825.5 423 93.1
CARHR266990 Cardamine hirsuta HOM05D006845 ORTHO05D009300 1.2e-236 822.8 423 93.6
BolC9t57269H Brassica oleracea HOM05D006845 ORTHO05D009300 2.0e-234 815.5 434 92.6
BraA10t43218Z Brassica rapa HOM05D006845 ORTHO05D009300 4.7e-228 794.3 468 85.7
Aa31LG3G10070 Aethionema arabicum HOM05D006845 ORTHO05D009300 8.5e-222 773.5 402 92.5
THA.LOC104811867 Tarenaya hassleriana HOM05D006845 ORTHO05D009300 1.6e-212 742.7 423 83.9
Thecc.07G091800 Theobroma cacao HOM05D006845 ORTHO05D009300 1.3e-206 723.0 423 79.2
Gohir.D08G031900 Gossypium hirsutum HOM05D006845 ORTHO05D009300 1.7e-206 722.6 423 79.0
Gohir.A08G021200 Gossypium hirsutum HOM05D006845 ORTHO05D009300 1.1e-205 719.9 423 78.7
Gorai.004G029400 Gossypium raimondii HOM05D006845 ORTHO05D009300 4.3e-205 718.0 423 78.5
Prupe.4G179900 Prunus persica HOM05D006845 ORTHO05D009300 2.0e-202 709.1 423 77.3
Manes.15G087900 Manihot esculenta HOM05D006845 ORTHO05D009300 4.4e-202 708.0 423 78.0
PGR083G0376 Punica granatum HOM05D006845 ORTHO05D009300 8.3e-201 703.7 423 77.3
Ciclev10008389m.g Citrus clementina HOM05D006845 ORTHO05D009300 3.5e-199 698.4 427 76.6
Eucgr.F01150 Eucalyptus grandis HOM05D006845 ORTHO05D009300 1.3e-198 696.4 424 75.9
GSVIVG01014313001 Vitis vinifera HOM05D006845 ORTHO05D009300 1.9e-197 692.6 424 75.2
CANSAT56G3540 Cannabis sativa HOM05D006845 ORTHO05D009300 7.3e-197 690.6 426 74.6
COL.COLO4_27185 Corchorus olitorius HOM05D006845 ORTHO05D009300 7.3e-197 690.6 423 75.4
Potri.001G398900 Populus trichocarpa HOM05D006845 ORTHO05D009300 7.3e-197 690.6 411 77.4
Potri.011G118000 Populus trichocarpa HOM05D006845 ORTHO05D009300 7.3e-197 690.6 421 75.5
MD11G1250000 Malus domestica HOM05D006845 ORTHO05D009300 2.8e-196 688.7 420 74.8
RcHm_v2.0_Chr5g0033181 Rosa chinensis HOM05D006845 ORTHO05D009300 3.6e-196 688.3 417 75.3
CSS0022560 Camellia sinensis var. sinensis HOM05D006845 ORTHO05D009300 1.1e-195 686.8 425 73.2
Nn1g06500 Nelumbo nucifera HOM05D006845 ORTHO05D009300 1.1e-195 686.8 423 74.0
Atru.chr2.2481 Acer truncatum HOM05D006845 ORTHO05D009300 8.9e-195 683.7 412 77.2
FvH4_3g19780 Fragaria vesca HOM05D006845 ORTHO05D009300 1.2e-194 683.3 417 75.3
QL08p022228 Quercus lobata HOM05D006845 ORTHO05D009300 1.2e-194 683.3 422 73.9
ClCG11G018010 Citrullus lanatus HOM05D006845 ORTHO05D009300 2.6e-194 682.2 412 75.5
Sed0008037 Sechium edule HOM05D006845 ORTHO05D009300 5.8e-194 681.0 423 74.2
CiPaw.11G170600 Carya illinoinensis HOM05D006845 ORTHO05D009300 1.3e-193 679.9 423 74.5
Solyc12g013890.2 Solanum lycopersicum HOM05D006845 ORTHO05D009300 1.7e-193 679.5 425 72.9
Sopen12g007210 Solanum pennellii HOM05D006845 ORTHO05D009300 2.2e-193 679.1 425 72.7
Dinv14926 Davidia involucrata HOM05D006845 ORTHO05D009300 8.3e-193 677.2 420 74.0
Lalb_Chr25g0286311 Lupinus albus HOM05D006845 ORTHO05D009300 1.9e-192 676.0 416 76.4
CsaV3_4G033630 Cucumis sativus L. HOM05D006845 ORTHO05D009300 3.2e-192 675.2 423 73.0
Cfa020572 Carpinus fangiana HOM05D006845 ORTHO05D009300 7.0e-192 674.1 412 76.5
Lj3g0006633 Lotus japonicus HOM05D006845 ORTHO05D009300 7.0e-192 674.1 417 75.8
TAR627G0110 Trochodendron aralioides HOM05D006845 ORTHO05D009300 9.2e-192 673.7 424 71.7
arahy.Tifrunner.gnm1.ann1.61G52X Arachis hypogaea HOM05D006845 ORTHO05D009300 4.6e-191 671.4 417 74.6
MELO3C016692.2 Cucumis melo HOM05D006845 ORTHO05D009300 6.0e-191 671.0 417 72.9
MD03G1229200 Malus domestica HOM05D006845 ORTHO05D009300 1.0e-190 670.2 421 74.6
TWI39G1089 Tripterygium wilfordii HOM05D006845 ORTHO05D009300 3.0e-190 668.7 423 73.3
PSO541G3085 Papaver somniferum HOM05D006845 ORTHO05D009300 3.9e-190 668.3 424 71.2
PSO675G5588 Papaver somniferum HOM05D006845 ORTHO05D009300 3.9e-190 668.3 424 71.0
Glyma.12G225400 Glycine max HOM05D006845 ORTHO05D009300 6.6e-190 667.5 424 73.6
CAN.G213.11 Capsicum annuum HOM05D006845 ORTHO05D009300 8.6e-190 667.2 414 73.9
arahy.Tifrunner.gnm1.ann1.ME6152 Arachis hypogaea HOM05D006845 ORTHO05D009300 2.5e-189 665.6 417 73.9
Hma1.2p1_0898F.1_g234490 Hydrangea macrophylla HOM05D006845 ORTHO05D009300 4.3e-189 664.8 412 73.3
Glyma.13G275900 Glycine max HOM05D006845 ORTHO05D009300 6.2e-188 661.0 424 73.1
FAN11G1119 Fragaria x ananassa HOM05D006845 ORTHO05D009300 6.8e-187 657.5 411 74.5
Oeu051072.2 Olea europaea HOM05D006845 ORTHO05D009300 2.0e-186 656.0 450 69.3
MSTRG.14352 Avicennia marina HOM05D006845 ORTHO05D009300 4.4e-186 654.8 425 70.1
Migut.H01945 Erythranthe guttata HOM05D006845 ORTHO05D009300 7.5e-186 654.1 425 69.6
AUR62039192 Chenopodium quinoa HOM05D006845 ORTHO05D009300 2.2e-185 652.5 424 69.8
FAN21G2917 Fragaria x ananassa HOM05D006845 ORTHO05D009300 4.9e-185 651.4 426 71.6
EL10Ac4g08199 Beta vulgaris HOM05D006845 ORTHO05D009300 5.4e-184 647.9 423 69.5
Duzib213G0603 Durio zibethinus HOM05D006845 ORTHO05D009300 4.6e-183 644.8 423 71.9
Aqoxy1G02380 Aquilegia oxysepala HOM05D006845 ORTHO05D009300 1.0e-182 643.7 403 72.5
VMungo1080G1688 Vigna mungo HOM05D006845 ORTHO05D009300 5.1e-182 641.3 424 71.9
HanXRQChr12g0364151 Helianthus annuus HOM05D006845 ORTHO05D009300 1.5e-181 639.8 424 67.9
AUR62019438 Chenopodium quinoa HOM05D006845 ORTHO05D009300 1.9e-181 639.4 412 69.7
Phvul.005G073100 Phaseolus vulgaris HOM05D006845 ORTHO05D009300 2.8e-180 635.6 418 71.8
FAN25G1923 Fragaria x ananassa HOM05D006845 ORTHO05D009300 8.1e-180 634.0 417 70.7
DCAR_017135 Daucus carota HOM05D006845 ORTHO05D009300 1.8e-179 632.9 407 69.8
Nitab4.5_0003378g0090 Nicotiana tabacum HOM05D006845 ORTHO05D009300 1.5e-178 629.8 425 69.2
Actinidia18770 Actinidia chinensis HOM05D006845 ORTHO05D009300 1.4e-176 623.2 387 71.6
CDE02G1035 Ceratophyllum demersum HOM05D006845 ORTHO05D009300 2.4e-176 622.5 423 67.4
Sabra16G0261500 Salix brachista HOM05D006845 ORTHO05D009300 3.2e-176 622.1 540 58.3
Peaxi162Scf00000g00345 Petunia axillaris HOM05D006845 ORTHO05D009300 1.2e-175 620.2 425 68.5
Lsat_1_v5_gn_9_97520 Lactuca sativa HOM05D006845 ORTHO05D009300 1.5e-173 613.2 418 67.2
FAN16G0640 Fragaria x ananassa HOM05D006845 ORTHO05D009300 9.6e-173 610.5 411 70.3
ATR0737G060 Amborella trichopoda HOM05D006845 ORTHO05D009300 2.8e-172 609.0 422 65.6
Ca_03508_v3 Cicer arietinum L. HOM05D006845 ORTHO05D009300 4.4e-170 601.7 419 68.5
SGA_v2.0_scaffold70G23678 Striga asiatica HOM05D006845 ORTHO05D009300 1.7e-169 599.7 409 68.7
Nitab4.5_0000332g0060 Nicotiana tabacum HOM05D006845 ORTHO05D009300 2.8e-164 582.4 457 62.1
Ah.06g184430 Amaranthus hybridus HOM05D006845 ORTHO05D009300 1.2e-162 577.0 414 66.2
HPP92_003615 Vanilla planifolia HOM05D006845 ORTHO05D009300 1.3e-161 573.5 422 61.8
Medtr2g079060 Medicago truncatula HOM05D006845 ORTHO05D009300 1.1e-155 553.9 413 65.4
Psat5g242160 Pisum sativum HOM05D006845 ORTHO05D009300 9.0e-155 550.8 401 65.6
Actinidia35244 Actinidia chinensis HOM05D006845 ORTHO05D009300 2.8e-148 529.3 414 60.1
TPR.G7949 Trifolium pratense HOM05D006845 ORTHO05D009300 4.8e-148 528.5 364 68.1
Lj1C841T8 Lonicera japonica HOM05D006845 ORTHO05D009300 1.1e-144 517.3 371 65.8
Sc16g0007040 Simmondsia chinensis HOM05D006845 ORTHO05D009300 6.0e-143 511.5 312 75.0
Haze_09439 Corylus avellana HOM05D006845 ORTHO05D009300 4.1e-139 498.8 380 64.5
Cpa.g.sc80.77 Carica papaya HOM05D006845 ORTHO05D009300 3.4e-138 495.7 423 59.8
ECA240G2176 Erigeron canadensis HOM05D006845 ORTHO05D009300 8.5e-137 491.1 313 70.9
BcaB07g33336 Brassica carinata HOM05D006845 ORTHO05D009300 5.5e-112 408.7 204 95.6
Cc05_g11930 Coffea canephora HOM05D006845 ORTHO05D009300 1.1e-91 341.3 214 70.1
SEGI_13558 Sequoiadendron giganteum HOM05D006845 ORTHO05D009300 5.4e-91 339.0 346 44.2
Pp3c1_32740 Physcomitrium patens HOM05D006845 ORTHO05D009300 3.1e-86 323.2 345 45.2
Cc05_g11920 Coffea canephora HOM05D006845 ORTHO05D009300 5.4e-83 312.4 204 71.1
AagrBONN_evm.TU.Sc2ySwM_344.572 Anthoceros agrestis HOM05D006845 ORTHO05D009300 1.3e-81 307.8 384 40.1
Mapoly0037s0133 Marchantia polymorpha HOM05D006845 ORTHO05D009300 2.3e-73 280.4 347 38.0
SMO143G0137 Selaginella moellendorffii HOM05D006845 ORTHO05D009300 5.2e-62 242.7 280 42.9
unitig_899.g15568 Utricularia gibba HOM05D006845 ORTHO05D009300 2.3e-41 174.1 106 73.6
BcaB04g16942 Brassica carinata HOM05D006845 ORTHO05D009300 3.7e-39 166.8 140 67.1
Sabra11G0103000 Salix brachista HOM05D006845 ORTHO05D009300 6.9e-38 162.5 85 85.9
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 6.4e-36 156.0 103 65.0
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 6.0e-34 149.4 106 62.3
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 6.0e-34 149.4 106 62.3
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 2.3e-33 147.5 103 62.1
FAN12G2298 Fragaria x ananassa HOM05D006845 ORTHO05D014206 1.9e-11 74.7 49 65.3
FAN25G3098 Fragaria x ananassa HOM05D006845 ORTHO05D014206 1.2e-10 72.0 49 63.3
FAN05G4902 Fragaria x ananassa HOM05D006845 ORTHO05D014206 1.6e-10 71.6 50 62.0
MBI02_g32976_MAGBIO Magnolia biondii HOM05D000872 ORTHO05D014206 1.4e-09 68.6 47 63.8
Hma1.2p1_0554F.1_g177810 Hydrangea macrophylla HOM05D006845 ORTHO05D014206 7.4e-08 62.8 45 62.2
FAN09G2373 Fragaria x ananassa HOM05D006845 ORTHO05D014206 9.7e-08 62.4 48 56.2


User provided reference genes

Program Settings