Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20409 Brassica carinata HOM05D002563 ORTHO05D008422 3.1e-34 147.9 74 100.0
BcaC05g24667 Brassica carinata HOM05D002563 ORTHO05D008422 3.5e-22 107.8 78 74.4
A10p05560 Brassica napus HOM05D002563 ORTHO05D008422 4.6e-22 107.5 78 73.1
BcaB02g06775 Brassica carinata HOM05D002563 ORTHO05D008422 7.8e-22 106.7 78 74.4
Thhalv10009773m.g Eutrema salsugineum HOM05D002563 ORTHO05D008422 3.3e-20 101.3 79 70.9
CARHR006700 Cardamine hirsuta HOM05D002563 ORTHO05D008422 1.1e-18 96.3 78 65.4
Carub.0001s0630 Capsella rubella HOM05D002563 ORTHO05D008422 1.4e-18 95.9 78 65.4
Aa31LG1G8060 Aethionema arabicum HOM05D002563 ORTHO05D008422 1.8e-18 95.5 78 64.1
AL1G17070 Arabidopsis lyrata HOM05D002563 ORTHO05D008422 3.1e-18 94.7 78 64.1
AT1G07010 Arabidopsis thaliana HOM05D002563 ORTHO05D008422 4.0e-18 94.4 78 62.8
Sp1g05730 Schrenkiella parvula HOM05D002563 ORTHO05D008422 1.2e-17 92.8 79 65.8
BolC5t29282H Brassica oleracea HOM05D002563 ORTHO05D008422 1.5e-17 92.4 72 68.1
BraA10t42817Z Brassica rapa HOM05D002563 ORTHO05D008422 1.4e-15 85.9 82 59.8
Cpa.g.sc2.360 Carica papaya HOM05D002563 ORTHO05D008422 7.1e-15 83.6 78 52.6
THA.LOC104800768 Tarenaya hassleriana HOM05D002563 ORTHO05D008422 7.1e-15 83.6 79 57.0
C05p05110 Brassica napus HOM05D002563 ORTHO05D008422 1.6e-14 82.4 59 67.8
Prupe.6G048800 Prunus persica HOM05D002563 ORTHO05D008422 1.6e-14 82.4 80 56.2
Migut.D00849 Erythranthe guttata HOM05D002563 ORTHO05D008422 2.1e-14 82.0 78 52.6
Peaxi162Scf00390g00724 Petunia axillaris HOM05D002563 ORTHO05D008422 2.1e-14 82.0 75 48.0
CiPaw.13G069700 Carya illinoinensis HOM05D002563 ORTHO05D008422 2.7e-14 81.6 78 52.6
Nitab4.5_0007880g0070 Nicotiana tabacum HOM05D002563 ORTHO05D008422 2.7e-14 81.6 77 51.9
Nitab4.5_0013425g0010 Nicotiana tabacum HOM05D002563 ORTHO05D008422 2.7e-14 81.6 77 51.9
Ciclev10028625m.g Citrus clementina HOM05D002563 ORTHO05D008422 3.5e-14 81.3 78 55.1
MD11G1056900 Malus domestica HOM05D002563 ORTHO05D008422 7.9e-14 80.1 78 51.3
Nn2g11002 Nelumbo nucifera HOM05D002563 ORTHO05D008422 2.3e-13 78.6 78 51.3
PGR102G1165 Punica granatum HOM05D002563 ORTHO05D008422 3.0e-13 78.2 78 47.4
FvH4_3g39710 Fragaria vesca HOM05D002563 ORTHO05D008422 3.9e-13 77.8 78 52.6
RcHm_v2.0_Chr5g0071581 Rosa chinensis HOM05D002563 ORTHO05D008422 3.9e-13 77.8 78 51.3
EL10Ac7g15915 Beta vulgaris HOM05D002563 ORTHO05D008422 6.7e-13 77.0 78 48.7
Solyc06g082280.3 Solanum lycopersicum HOM05D002563 ORTHO05D008422 6.7e-13 77.0 78 47.4
Duzib168G1120 Durio zibethinus HOM05D002563 ORTHO05D008422 8.7e-13 76.6 78 48.7
PGSC0003DMG400030377 Solanum tuberosum HOM05D002563 ORTHO05D008422 8.7e-13 76.6 78 46.2
Hund29015 Selenicereus undatus HOM05D002563 ORTHO05D008422 1.5e-12 75.9 78 51.3
TWI31G1024 Tripterygium wilfordii HOM05D002563 ORTHO05D008422 1.5e-12 75.9 75 49.3
Aqoxy1G01294 Aquilegia oxysepala HOM05D002563 ORTHO05D008422 2.5e-12 75.1 78 48.7
COL.COLO4_11148 Corchorus olitorius HOM05D002563 ORTHO05D008422 2.5e-12 75.1 82 47.6
Gohir.A13G234800 Gossypium hirsutum HOM05D002563 ORTHO05D008422 2.5e-12 75.1 78 48.7
Gohir.D13G240500 Gossypium hirsutum HOM05D002563 ORTHO05D008422 2.5e-12 75.1 78 48.7
Oeu025051.1 Olea europaea HOM05D002563 ORTHO05D008422 2.5e-12 75.1 78 48.7
Atru.BG.123.p Acer truncatum HOM05D002563 ORTHO05D008422 4.3e-12 74.3 75 52.0
Glyma.14G198700 Glycine max HOM05D002563 ORTHO05D008422 4.3e-12 74.3 78 50.0
Gorai.013G271300 Gossypium raimondii HOM05D002563 ORTHO05D008422 4.3e-12 74.3 78 48.7
QL01p026431 Quercus lobata HOM05D002563 ORTHO05D008422 4.3e-12 74.3 78 47.4
Sopen06g033660 Solanum pennellii HOM05D002563 ORTHO05D008422 4.3e-12 74.3 78 44.9
CAN.G1095.22 Capsicum annuum HOM05D002563 ORTHO05D008422 5.6e-12 73.9 78 44.9
Eucgr.B04000 Eucalyptus grandis HOM05D002563 ORTHO05D008422 5.6e-12 73.9 78 48.7
FAN25G2495 Fragaria x ananassa HOM05D002563 ORTHO05D008422 5.6e-12 73.9 75 53.3
Thecc.09G357200 Theobroma cacao HOM05D002563 ORTHO05D008422 5.6e-12 73.9 78 46.2
VMungo0647G2159 Vigna mungo HOM05D002563 ORTHO05D008422 5.6e-12 73.9 78 50.0
CSS0036604 Camellia sinensis var. sinensis HOM05D002563 ORTHO05D008422 7.4e-12 73.6 78 46.2
DCAR_018229 Daucus carota HOM05D002563 ORTHO05D008422 9.6e-12 73.2 77 48.1
Glyma.02G231100 Glycine max HOM05D002563 ORTHO05D008422 9.6e-12 73.2 78 47.4
FAN21G1037 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.3e-11 72.8 94 44.7
FAN21G1383 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.3e-11 72.8 94 44.7
Rhsim13G0064600 Rhododendron simsii HOM05D002563 ORTHO05D008422 1.3e-11 72.8 81 45.7
CANSAT54G2788 Cannabis sativa HOM05D002563 ORTHO05D008422 1.6e-11 72.4 78 44.9
MELO3C020515.2 Cucumis melo HOM05D002563 ORTHO05D008422 1.6e-11 72.4 78 50.0
FAN11G3709 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.6e-11 72.4 75 52.0
FAN16G2606 Fragaria x ananassa HOM05D002563 ORTHO05D008422 1.6e-11 72.4 75 52.0
Haze_24408 Corylus avellana HOM05D002563 ORTHO05D008422 2.1e-11 72.0 72 50.0
HanXRQChr01g0012171 Helianthus annuus HOM05D002563 ORTHO05D008422 2.1e-11 72.0 78 46.2
TPR.G29139 Trifolium pratense HOM05D002563 ORTHO05D008422 2.1e-11 72.0 78 48.7
TAR623G0598 Trochodendron aralioides HOM05D002563 ORTHO05D008422 2.8e-11 71.6 78 48.7
GSVIVG01024637001 Vitis vinifera HOM05D002563 ORTHO05D008422 2.8e-11 71.6 78 43.6
arahy.Tifrunner.gnm1.ann1.FHS7BK Arachis hypogaea HOM05D002563 ORTHO05D008422 3.7e-11 71.2 78 46.2
arahy.Tifrunner.gnm1.ann1.R8SLY5 Arachis hypogaea HOM05D002563 ORTHO05D008422 3.7e-11 71.2 78 46.2
Ca_05647_v3 Cicer arietinum L. HOM05D002563 ORTHO05D008422 3.7e-11 71.2 78 47.4
Psat2g053720 Pisum sativum HOM05D002563 ORTHO05D008422 3.7e-11 71.2 78 48.7
Potri.009G077900 Populus trichocarpa HOM05D002563 ORTHO05D008422 3.7e-11 71.2 78 48.7
unitig_0.g2143 Utricularia gibba HOM05D002563 ORTHO05D008422 3.7e-11 71.2 75 48.0
CsaV3_1G036530 Cucumis sativus L. HOM05D002563 ORTHO05D008422 4.8e-11 70.9 78 48.7
Actinidia23200 Actinidia chinensis HOM05D002563 ORTHO05D008422 6.2e-11 70.5 78 48.7
Sabra09G0059500 Salix brachista HOM05D002563 ORTHO05D008422 6.2e-11 70.5 79 50.6
Sed0022573 Sechium edule HOM05D002563 ORTHO05D008422 6.2e-11 70.5 79 50.6
AUR62009674 Chenopodium quinoa HOM05D002563 ORTHO05D008422 8.1e-11 70.1 80 47.5
Lsat_1_v5_gn_5_174641 Lactuca sativa HOM05D002563 ORTHO05D008422 8.1e-11 70.1 78 47.4
Manes.18G127800 Manihot esculenta HOM05D002563 ORTHO05D008422 8.1e-11 70.1 78 47.4
PSO349G0182 Papaver somniferum HOM05D002563 ORTHO05D008422 8.1e-11 70.1 79 46.8
MSTRG.21237 Avicennia marina HOM05D002563 ORTHO05D008422 1.1e-10 69.7 78 43.6
LjContig00141g0005241 Lotus japonicus HOM05D002563 ORTHO05D008422 1.1e-10 69.7 78 44.9
PSO765G0005 Papaver somniferum HOM05D002563 ORTHO05D008422 1.1e-10 69.7 79 45.6
Sc12g0002000 Simmondsia chinensis HOM05D002563 ORTHO05D008422 1.1e-10 69.7 78 44.9
Medtr5g072900 Medicago truncatula HOM05D002563 ORTHO05D008422 1.4e-10 69.3 78 46.2
Lalb_Chr04g0251991 Lupinus albus HOM05D002563 ORTHO05D008422 2.4e-10 68.6 78 47.4
SGA_v2.0_scaffold20G09295 Striga asiatica HOM05D002563 ORTHO05D008422 2.4e-10 68.6 78 48.7
BcaNung06196 Brassica carinata HOM05D002563 ORTHO05D008422 3.1e-10 68.2 54 63.0
Phvul.008G256500 Phaseolus vulgaris HOM05D002563 ORTHO05D008422 3.1e-10 68.2 78 47.4
Cc01_g14820 Coffea canephora HOM05D002563 ORTHO05D008422 4.0e-10 67.8 78 46.2
Dinv28695 Davidia involucrata HOM05D002563 ORTHO05D008422 5.3e-10 67.4 60 50.0
Lj2A1092G52 Lonicera japonica HOM05D002563 ORTHO05D008422 5.3e-10 67.4 75 46.7
ECA248G2589 Erigeron canadensis HOM05D002563 ORTHO05D008422 6.9e-10 67.0 78 43.6
ATR0594G062 Amborella trichopoda HOM05D002563 ORTHO05D008422 9.0e-10 66.6 77 41.6
CDE04G2686 Ceratophyllum demersum HOM05D002563 ORTHO05D008422 1.2e-09 66.2 79 46.8
ClCG03G000390 Citrullus lanatus HOM05D002563 ORTHO05D008422 1.7e-08 62.4 72 45.8
MD03G1055900 Malus domestica HOM05D002563 ORTHO05D008422 4.9e-08 60.8 71 43.7
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.4e-07 59.3 94 35.1
Zm00001eb048700 Zea mays HOM05D002563 ORTHO05D008422 1.9e-07 58.9 79 43.0


User provided reference genes

Program Settings