Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 2.8e-221 771.5 369 100.0
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 3.5e-94 349.4 434 51.2
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 4.5e-94 349.0 434 50.9
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 2.2e-93 346.7 434 50.7
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 2.9e-93 346.3 434 50.5
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 5.0e-93 345.5 434 50.5
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 2.7e-91 339.7 434 50.2
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 4.7e-91 339.0 427 50.4
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 4.7e-91 339.0 427 50.4
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 5.2e-90 335.5 434 50.0
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 6.8e-90 335.1 384 53.4
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 3.4e-89 332.8 432 49.3
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 4.5e-86 322.4 434 48.2
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 3.3e-84 316.2 412 48.8
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 7.8e-78 295.0 419 45.8
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 4.4e-73 279.3 422 44.1
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 7.5e-73 278.5 422 43.8
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 9.8e-73 278.1 422 43.8
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 8.3e-72 275.0 432 44.0
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 2.4e-71 273.5 418 43.5
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 9.2e-71 271.6 382 44.5
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.2e-70 271.2 411 44.0
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 2.0e-70 270.4 363 47.1
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 4.6e-70 269.2 412 43.2
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 1.7e-69 267.3 369 45.5
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.7e-69 267.3 432 42.8
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 2.3e-69 266.9 385 45.5
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 3.9e-69 266.2 433 42.0
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 5.0e-69 265.8 369 44.7
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 6.6e-69 265.4 436 41.5
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 8.6e-69 265.0 414 42.8
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.1e-68 264.6 385 45.2
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.5e-68 264.2 443 41.5
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.5e-68 263.5 445 41.3
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 2.5e-68 263.5 430 41.2
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 2.5e-68 263.5 449 40.5
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 4.3e-68 262.7 374 45.2
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 5.6e-68 262.3 414 42.3
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 5.6e-68 262.3 432 41.7
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 9.5e-68 261.5 433 41.6
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 9.5e-68 261.5 385 44.9
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 9.5e-68 261.5 421 42.0
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.2e-67 261.2 419 42.5
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.6e-67 260.8 381 44.1
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 1.6e-67 260.8 360 45.0
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 2.1e-67 260.4 380 44.7
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 3.6e-67 259.6 383 43.3
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 3.6e-67 259.6 413 42.9
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 4.7e-67 259.2 429 41.3
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 8.0e-67 258.5 425 41.4
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.1e-66 258.1 362 44.2
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.1e-66 258.1 416 42.3
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.1e-66 258.1 416 42.3
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.1e-66 258.1 432 41.0
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.1e-66 258.1 416 42.3
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.1e-66 258.1 379 42.7
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 1.4e-66 257.7 412 42.0
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 1.8e-66 257.3 379 43.5
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 2.3e-66 256.9 376 43.1
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.3e-66 256.9 416 41.8
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 2.3e-66 256.9 363 43.5
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 3.1e-66 256.5 362 45.0
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.0e-66 256.1 363 43.8
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 5.2e-66 255.8 419 41.8
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 6.8e-66 255.4 417 42.0
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.8e-66 255.4 363 43.8
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 6.8e-66 255.4 373 42.9
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 6.8e-66 255.4 363 44.9
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.2e-65 254.6 361 45.2
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.5e-65 254.2 432 40.3
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.0e-65 253.8 362 45.6
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.4e-65 253.1 405 41.2
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 4.4e-65 252.7 374 43.3
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 4.4e-65 252.7 364 44.5
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 5.8e-65 252.3 419 41.1
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 7.5e-65 251.9 364 44.8
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 9.8e-65 251.5 369 43.4
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 9.8e-65 251.5 365 43.8
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.7e-64 250.8 431 40.4
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 2.9e-64 250.0 431 40.6
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 6.4e-64 248.8 416 40.9
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 3.2e-63 246.5 414 41.8
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 5.4e-63 245.7 386 41.5
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.0e-61 241.5 363 42.1
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.9e-61 239.6 392 40.3
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 3.3e-60 236.5 364 44.0
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.2e-59 234.6 373 41.0
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.6e-59 234.2 314 47.1
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 4.7e-59 232.6 401 39.7
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 4.7e-59 232.6 401 39.7
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.8e-58 230.7 371 42.3
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 4.0e-58 229.6 360 41.7
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.7e-56 224.2 381 41.5
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.4e-55 221.1 326 45.4
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.9e-55 220.7 266 49.2
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.1e-55 219.5 313 44.7
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.7e-53 214.2 306 44.4
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 2.3e-53 213.8 289 45.7
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.6e-51 207.6 368 38.6
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 1.8e-50 204.1 447 35.3
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 4.0e-50 203.0 269 48.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 6.8e-50 202.2 368 37.5
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 2.0e-49 200.7 431 36.7
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 9.9e-49 198.4 303 43.6
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 4.9e-48 196.1 246 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.4e-47 194.5 261 42.5
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 5.1e-45 186.0 359 35.7
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 1.4e-42 177.9 127 77.2
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 7.8e-38 162.2 416 32.5
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.3e-32 144.8 386 31.9
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.4e-31 141.4 83 80.7
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 3.4e-25 120.2 247 36.0
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.2e-22 111.7 165 47.3
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 8.7e-21 105.5 195 37.4
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 6.9e-18 95.9 129 48.1
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.3e-13 80.9 112 47.3
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 6.7e-13 79.3 73 56.2
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 1.6e-11 74.7 168 33.9
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.8e-10 71.2 31 96.8
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.4e-09 67.0 118 37.3
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.2e-06 58.5 114 36.0
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 2.7e-06 57.4 44 59.1


User provided reference genes

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