Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 8.2e-140 500.4 248 100.0
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 8.2e-140 500.4 248 100.0
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 1.5e-122 443.0 258 89.5
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 7.5e-101 370.9 183 100.0
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 4.0e-70 268.9 228 66.7
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 2.0e-69 266.5 228 65.8
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 3.4e-69 265.8 227 67.0
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 5.8e-69 265.0 226 66.8
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 3.7e-68 262.3 227 67.0
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 1.1e-67 260.8 244 60.2
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 7.8e-66 254.6 227 63.4
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 2.5e-64 249.6 151 87.4
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 2.5e-64 249.6 227 62.1
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 4.3e-64 248.8 223 62.3
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 1.4e-62 243.8 233 60.1
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 2.4e-59 233.0 221 58.8
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 5.6e-48 195.3 224 49.6
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 2.1e-47 193.4 286 42.3
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 4.8e-47 192.2 242 47.5
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 4.8e-47 192.2 222 49.1
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 6.2e-47 191.8 221 48.4
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 8.1e-47 191.4 228 48.2
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 8.1e-47 191.4 287 42.2
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 8.1e-47 191.4 257 45.9
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 1.1e-46 191.0 286 43.4
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 2.4e-46 189.9 106 91.5
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 4.0e-46 189.1 287 41.8
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 9.0e-46 188.0 139 69.1
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 1.5e-45 187.2 243 45.7
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 2.0e-45 186.8 243 45.7
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 3.4e-45 186.0 250 45.2
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 3.4e-45 186.0 240 45.0
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 5.8e-45 185.3 246 45.1
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 5.8e-45 185.3 229 47.6
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 1.3e-44 184.1 234 47.4
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 1.7e-44 183.7 243 44.0
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 1.7e-44 183.7 241 45.2
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 2.2e-44 183.3 226 46.9
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 2.2e-44 183.3 233 45.9
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 4.9e-44 182.2 238 45.0
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 4.9e-44 182.2 231 45.5
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 6.4e-44 181.8 240 43.8
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 1.4e-43 180.6 231 45.9
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 1.4e-43 180.6 264 42.4
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 1.9e-43 180.3 238 45.0
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 1.9e-43 180.3 242 43.4
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 1.9e-43 180.3 230 44.3
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 2.4e-43 179.9 230 44.3
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 3.2e-43 179.5 227 45.8
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 4.2e-43 179.1 230 46.5
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 7.1e-43 178.3 251 41.8
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 1.2e-42 177.6 239 46.4
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 1.6e-42 177.2 241 42.3
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 2.1e-42 176.8 242 43.0
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 3.5e-42 176.0 273 39.9
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 3.5e-42 176.0 228 43.4
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 6.0e-42 175.3 243 44.0
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 6.0e-42 175.3 243 44.0
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 6.0e-42 175.3 236 45.8
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 7.9e-42 174.9 238 41.2
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 2.3e-41 173.3 228 45.2
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 2.3e-41 173.3 230 42.6
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 3.0e-41 172.9 246 41.9
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 5.1e-41 172.2 226 45.1
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 1.1e-40 171.0 235 43.0
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 1.5e-40 170.6 211 48.8
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 1.9e-40 170.2 235 42.6
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.9e-40 170.2 206 47.6
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 1.9e-40 170.2 254 43.7
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 7.4e-40 168.3 313 38.0
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 1.3e-39 167.5 239 42.3
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 4.8e-39 165.6 135 60.7
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.1e-38 164.5 206 45.1
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.4e-38 164.1 239 42.3
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.8e-38 163.7 231 42.9
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 6.9e-38 161.8 248 41.5
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 4.5e-37 159.1 161 55.3
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 1.3e-36 157.5 247 39.3
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 2.2e-36 156.8 151 54.3
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 2.2e-36 156.8 299 36.8
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 2.2e-36 156.8 244 39.8
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 2.9e-36 156.4 151 53.6
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 1.1e-35 154.5 134 54.5
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 9.3e-35 151.4 247 41.3
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 1.2e-34 151.0 159 51.6
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 1.2e-34 151.0 148 52.0
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 6.0e-34 148.7 135 54.1
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.3e-33 147.5 141 52.5
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 8.7e-33 144.8 183 45.9
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 8.7e-33 144.8 135 52.6
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 1.6e-31 140.6 243 37.0
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 6.2e-31 138.7 263 31.9
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 8.2e-31 138.3 289 37.4
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 5.3e-30 135.6 289 37.0
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 6.9e-30 135.2 236 38.6
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 2.0e-29 133.7 149 43.6
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 5.8e-29 132.1 128 53.9
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 7.6e-29 131.7 121 54.5
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 2.2e-28 130.2 212 38.7
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 6.5e-28 128.6 157 48.4
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 8.4e-28 128.3 186 40.9
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 2.7e-26 123.2 199 37.7
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 6.7e-25 118.6 246 34.6
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 3.3e-24 116.3 183 39.3
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 5.7e-24 115.5 280 33.6
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 5.7e-24 115.5 188 39.9
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 5.0e-20 102.4 135 40.0
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.4e-19 100.9 257 31.1
C02p25250 Brassica napus HOM05D006469 ORTHO05D008034 7.4e-16 88.6 51 92.2
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 3.7e-15 86.3 238 31.9
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 4.8e-15 85.9 149 37.6
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 1.2e-10 71.2 215 29.8
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 3.9e-09 66.2 194 27.8


User provided reference genes

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