Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 1.9e-83 312.4 153 100.0
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.5e-51 206.5 122 86.9
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 3.7e-50 201.8 147 72.8
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 3.7e-50 201.8 147 72.8
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 6.8e-44 181.0 136 72.8
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-43 180.3 127 74.0
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 7.3e-38 161.0 185 53.5
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 7.3e-38 161.0 185 53.5
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 7.3e-38 161.0 185 53.5
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 7.3e-38 161.0 185 53.5
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 9.5e-38 160.6 198 50.0
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 9.5e-38 160.6 198 50.0
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 9.5e-38 160.6 198 50.5
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 9.5e-38 160.6 185 50.8
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.2e-37 160.2 185 53.0
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 2.1e-37 159.5 185 52.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.0e-36 157.1 185 51.9
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.4e-36 156.8 185 53.0
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.4e-36 156.8 198 49.0
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 4.1e-33 145.2 185 47.6
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 9.2e-33 144.1 185 48.6
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 9.2e-33 144.1 216 44.9
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.2e-32 143.7 185 47.6
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 2.0e-32 142.9 185 47.0
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 4.6e-32 141.7 185 45.9
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 4.6e-32 141.7 185 46.5
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 4.6e-32 141.7 185 46.5
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 4.6e-32 141.7 185 46.5
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 5.9e-32 141.4 185 47.0
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 5.9e-32 141.4 185 47.6
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 5.9e-32 141.4 185 47.0
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 5.9e-32 141.4 163 50.3
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 7.8e-32 141.0 185 47.0
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.0e-31 140.6 185 46.5
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.3e-31 140.2 185 46.5
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.3e-31 140.2 216 42.1
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.7e-31 139.8 170 48.8
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.7e-31 139.8 185 46.5
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.3e-31 139.4 163 50.3
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 2.3e-31 139.4 185 45.4
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 2.3e-31 139.4 185 45.4
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 3.0e-31 139.0 185 47.0
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 3.0e-31 139.0 185 47.0
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.0e-31 139.0 185 47.0
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.0e-31 139.0 185 47.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 3.0e-31 139.0 185 46.5
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 3.0e-31 139.0 185 47.0
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 3.0e-31 139.0 185 46.5
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.9e-31 138.7 185 46.5
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 5.0e-31 138.3 185 44.9
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 5.0e-31 138.3 185 46.5
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 6.6e-31 137.9 185 46.5
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 6.6e-31 137.9 185 45.9
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 6.6e-31 137.9 185 45.4
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 8.6e-31 137.5 120 66.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 8.6e-31 137.5 185 45.9
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.1e-30 137.1 185 44.9
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-30 137.1 186 46.2
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.1e-30 137.1 185 45.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.1e-30 137.1 183 45.9
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.1e-30 137.1 185 47.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.1e-30 137.1 185 47.0
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.5e-30 136.7 185 45.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.5e-30 136.7 185 45.9
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.9e-30 136.3 185 44.3
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.9e-30 136.3 185 45.4
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 2.5e-30 136.0 185 45.4
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.5e-30 136.0 185 45.9
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 2.5e-30 136.0 182 45.1
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.5e-30 136.0 185 45.4
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 2.5e-30 136.0 185 45.4
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 3.3e-30 135.6 186 45.7
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 3.3e-30 135.6 185 45.9
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.3e-30 135.6 183 45.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 3.3e-30 135.6 185 44.9
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 4.3e-30 135.2 185 44.9
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 4.3e-30 135.2 185 45.4
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.3e-30 135.2 185 47.0
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.3e-30 135.2 185 46.5
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 4.3e-30 135.2 185 44.9
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 4.3e-30 135.2 185 43.8
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 5.6e-30 134.8 185 45.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 7.3e-30 134.4 185 47.0
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 7.3e-30 134.4 185 45.9
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 9.5e-30 134.0 186 45.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.6e-29 133.3 185 45.4
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.6e-29 133.3 185 43.8
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.1e-29 132.9 185 43.2
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 2.8e-29 132.5 185 44.3
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.6e-29 132.1 185 46.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.8e-28 129.8 185 44.9
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.8e-28 129.8 185 44.3
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 6.8e-28 127.9 178 43.3
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 6.8e-28 127.9 185 39.5
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 6.8e-28 127.9 185 41.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 6.8e-28 127.9 185 43.8
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.9e-28 127.5 185 42.7
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 8.9e-28 127.5 185 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.5e-27 126.7 185 38.9
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.4e-27 125.6 183 38.8
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 4.4e-27 125.2 219 38.8
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 7.5e-27 124.4 198 38.4
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.3e-26 123.6 185 39.5
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.2e-26 122.9 185 42.7
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.4e-26 121.3 216 39.8
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 7.0e-25 117.9 217 39.2
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 6.0e-24 114.8 176 40.9
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.0e-23 114.0 180 40.0
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.9e-23 112.1 185 41.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 5.0e-23 111.7 59 84.7
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.9e-22 109.8 174 42.5
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 2.5e-22 109.4 59 84.7
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 2.5e-22 109.4 59 83.1
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 2.5e-22 109.4 59 83.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.3e-22 109.0 180 40.0
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 3.3e-22 109.0 59 79.7
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 5.6e-22 108.2 59 81.4
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 7.3e-22 107.8 59 83.1
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.2e-21 107.1 58 82.8
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.2e-21 107.1 59 81.4
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.6e-21 106.7 169 42.6
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.6e-21 106.7 59 79.7
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 4.7e-21 105.1 74 67.6
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 2.3e-20 102.8 163 42.9
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 4.0e-20 102.1 178 35.4
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.2e-19 100.5 168 41.1
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 1.2e-19 100.5 197 36.0
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.5e-19 100.1 178 32.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 5.4e-17 91.7 161 39.1
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.8e-13 79.3 67 56.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 3.1e-12 75.9 71 49.3
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 3.1e-12 75.9 71 49.3
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 4.0e-12 75.5 117 46.2
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.3e-10 70.5 59 62.7
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 9.2e-09 64.3 115 42.6
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 8.6e-07 57.8 109 41.3
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 9.6e-06 54.3 34 70.6


User provided reference genes

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