Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20382 Brassica carinata HOM05D002386 ORTHO05D019851 2.2e-73 278.9 140 100.0
BolC9t57299H Brassica oleracea HOM05D002386 ORTHO05D019851 2.2e-73 278.9 140 100.0
BcaC03g14016 Brassica carinata HOM05D002386 ORTHO05D019851 1.6e-71 272.7 140 98.6
BcaC09g48732 Brassica carinata HOM05D002386 ORTHO05D019851 1.6e-71 272.7 140 98.6
C01p46500 Brassica napus HOM05D002386 ORTHO05D019851 1.6e-71 272.7 140 98.6
BolC2t07354H Brassica oleracea HOM05D002386 ORTHO05D019851 1.6e-71 272.7 140 98.6
A01p14640 Brassica napus HOM05D002386 ORTHO05D006475 1.6e-60 236.1 136 91.9
BraA01t01404Z Brassica rapa HOM05D002386 ORTHO05D006475 1.6e-60 236.1 136 91.9
BcaC09g51001 Brassica carinata HOM05D002386 ORTHO05D019851 8.1e-60 233.8 138 89.1
C01p18140 Brassica napus HOM05D002386 ORTHO05D006475 8.1e-60 233.8 138 89.1
BolC1t01741H Brassica oleracea HOM05D002386 ORTHO05D006475 8.1e-60 233.8 138 89.1
BcaNung00971 Brassica carinata HOM05D002386 ORTHO05D006475 8.3e-57 223.8 140 86.4
Thhalv10024327m.g Eutrema salsugineum HOM05D002386 ORTHO05D006475 2.4e-43 179.1 155 72.3
Sp7g21340 Schrenkiella parvula HOM05D002386 ORTHO05D006475 8.9e-43 177.2 157 70.1
AT4G23440 Arabidopsis thaliana HOM05D002386 ORTHO05D006475 3.8e-41 171.8 155 68.4
AL7G30020 Arabidopsis lyrata HOM05D002386 ORTHO05D006475 8.4e-41 170.6 155 67.7
Carub.0007s1763 Capsella rubella HOM05D002386 ORTHO05D006475 9.3e-40 167.2 161 67.7
CARHR230770 Cardamine hirsuta HOM05D002386 ORTHO05D006475 3.5e-39 165.2 155 67.7
Aa31LG6G6630 Aethionema arabicum HOM05D002386 ORTHO05D006475 4.3e-37 158.3 160 61.9
C07p52670 Brassica napus HOM05D002386 ORTHO05D006475 1.1e-35 153.7 139 67.6
BolC7t45768H Brassica oleracea HOM05D002386 ORTHO05D006475 1.1e-35 153.7 139 67.6
A03p54290 Brassica napus HOM05D002386 ORTHO05D006475 3.1e-35 152.1 140 68.6
BraA03t14491Z Brassica rapa HOM05D002386 ORTHO05D006475 3.1e-35 152.1 140 68.6
BcaNung01440 Brassica carinata HOM05D002386 ORTHO05D006475 1.7e-33 146.4 139 66.9
THA.LOC104814630 Tarenaya hassleriana HOM05D002386 ORTHO05D006475 2.8e-28 129.0 145 57.9
C03p30150 Brassica napus HOM05D002386 ORTHO05D006475 6.4e-25 117.9 63 98.4
C08p25610 Brassica napus HOM05D002386 ORTHO05D006475 6.4e-25 117.9 63 98.4
Cpa.g.sc214.13 Carica papaya HOM05D002386 ORTHO05D006475 2.1e-20 102.8 188 44.7
GSVIVG01029435001 Vitis vinifera HOM05D002386 ORTHO05D006475 7.6e-18 94.4 158 48.7
MD14G1107900 Malus domestica HOM05D002386 ORTHO05D006475 1.0e-17 94.0 186 43.0
MD06G1086700 Malus domestica HOM05D002386 ORTHO05D006475 2.9e-17 92.4 186 41.9
Prupe.5G103200 Prunus persica HOM05D002386 ORTHO05D006475 3.8e-17 92.0 186 41.9
Thecc.10G083600 Theobroma cacao HOM05D002386 ORTHO05D006475 6.5e-17 91.3 186 43.0
Potri.003G129600 Populus trichocarpa HOM05D002386 ORTHO05D006475 8.4e-17 90.9 184 42.9
RcHm_v2.0_Chr7g0197191 Rosa chinensis HOM05D002386 ORTHO05D006475 8.4e-17 90.9 186 42.5
Cfa012209 Carpinus fangiana HOM05D002386 ORTHO05D006475 1.4e-16 90.1 187 42.8
FAN04G1337 Fragaria x ananassa HOM05D002386 ORTHO05D006475 1.4e-16 90.1 186 40.9
FAN08G0637 Fragaria x ananassa HOM05D002386 ORTHO05D006475 1.4e-16 90.1 186 40.9
COL.COLO4_34212 Corchorus olitorius HOM05D002386 ORTHO05D006475 1.9e-16 89.7 186 41.4
FvH4_5g02740 Fragaria vesca HOM05D002386 ORTHO05D006475 1.9e-16 89.7 186 40.9
FAN18G4077 Fragaria x ananassa HOM05D002386 ORTHO05D006475 1.9e-16 89.7 186 40.9
TWI60G0569 Tripterygium wilfordii HOM05D002386 ORTHO05D006475 1.9e-16 89.7 186 41.4
Gorai.011G236200 Gossypium raimondii HOM05D002386 ORTHO05D006475 2.5e-16 89.4 181 41.4
Sabra03G0092100 Salix brachista HOM05D002386 ORTHO05D006475 4.2e-16 88.6 184 42.4
QL12p032531 Quercus lobata HOM05D002386 ORTHO05D006475 5.5e-16 88.2 191 42.9
Gohir.D10G210700 Gossypium hirsutum HOM05D002386 ORTHO05D006475 7.1e-16 87.8 181 40.9
Ciclev10018685m.g Citrus clementina HOM05D002386 ORTHO05D006475 9.3e-16 87.4 190 42.6
Gohir.A10G202500 Gossypium hirsutum HOM05D002386 ORTHO05D006475 1.2e-15 87.0 181 40.9
Haze_08802 Corylus avellana HOM05D002386 ORTHO05D006475 1.6e-15 86.7 187 41.2
CiPaw.11G133200 Carya illinoinensis HOM05D002386 ORTHO05D006475 3.5e-15 85.5 188 41.0
Gohir.A05G411100 Gossypium hirsutum HOM05D002386 ORTHO05D006475 4.6e-15 85.1 172 43.6
Dinv37624 Davidia involucrata HOM05D002386 ORTHO05D006475 7.9e-15 84.3 184 39.7
Manes.02G021100 Manihot esculenta HOM05D002386 ORTHO05D006475 7.9e-15 84.3 186 41.4
DCAR_008370 Daucus carota HOM05D002386 ORTHO05D006475 1.3e-14 83.6 158 40.5
CANSAT21G0111 Cannabis sativa HOM05D002386 ORTHO05D006475 1.8e-14 83.2 187 39.6
Gohir.A05G292900 Gossypium hirsutum HOM05D002386 ORTHO05D006475 1.8e-14 83.2 176 40.3
Gohir.D04G004900 Gossypium hirsutum HOM05D002386 ORTHO05D006475 3.9e-14 82.0 173 41.6
Gorai.012G006200 Gossypium raimondii HOM05D002386 ORTHO05D006475 3.9e-14 82.0 173 41.6
Lj2A183T64 Lonicera japonica HOM05D002386 ORTHO05D006475 6.7e-14 81.3 159 40.9
Eucgr.D01831 Eucalyptus grandis HOM05D002386 ORTHO05D006475 8.7e-14 80.9 181 40.3
Sed0020631 Sechium edule HOM05D002386 ORTHO05D006475 1.9e-13 79.7 186 39.2
Duzib106G2040 Durio zibethinus HOM05D002386 ORTHO05D006475 3.3e-13 79.0 186 40.3
TAR375G0570 Trochodendron aralioides HOM05D002386 ORTHO05D006475 3.3e-13 79.0 189 39.2
Gohir.D05G293700 Gossypium hirsutum HOM05D002386 ORTHO05D006475 4.3e-13 78.6 176 38.6
TAR374G1581 Trochodendron aralioides HOM05D002386 ORTHO05D006475 4.3e-13 78.6 191 37.2
Oeu011039.5 Olea europaea HOM05D002386 ORTHO05D006475 5.7e-13 78.2 144 43.1
PGR031G0858 Punica granatum HOM05D002386 ORTHO05D006475 5.7e-13 78.2 163 42.3
Duzib128G1887 Durio zibethinus HOM05D002386 ORTHO05D006475 9.6e-13 77.4 185 40.0
CAN.G532.1 Capsicum annuum HOM05D002386 ORTHO05D006475 1.3e-12 77.0 182 38.5
CsaV3_5G002670 Cucumis sativus L. HOM05D002386 ORTHO05D006475 2.1e-12 76.3 186 37.6
Oeu042333.1 Olea europaea HOM05D002386 ORTHO05D006475 2.8e-12 75.9 146 40.4
ClCG01G002570 Citrullus lanatus HOM05D002386 ORTHO05D006475 8.2e-12 74.3 186 36.6
Cc08_g14930 Coffea canephora HOM05D002386 ORTHO05D006475 8.2e-12 74.3 156 37.8
Solyc08g081260.1 Solanum lycopersicum HOM05D002386 ORTHO05D006475 1.1e-11 73.9 181 36.5
Sopen08g029570 Solanum pennellii HOM05D002386 ORTHO05D006475 1.1e-11 73.9 181 36.5
TAR629G3360 Trochodendron aralioides HOM05D002386 ORTHO05D006475 1.1e-11 73.9 191 40.3
ECA233G1635 Erigeron canadensis HOM05D002386 ORTHO05D006475 1.4e-11 73.6 155 40.0
Nitab4.5_0002975g0010 Nicotiana tabacum HOM05D002386 ORTHO05D006475 1.4e-11 73.6 182 37.9
PGSC0003DMG400012335 Solanum tuberosum HOM05D002386 ORTHO05D006475 1.4e-11 73.6 182 37.9
Nitab4.5_0001522g0130 Nicotiana tabacum HOM05D002386 ORTHO05D006475 1.8e-11 73.2 184 36.4
Gorai.009G310300 Gossypium raimondii HOM05D002386 ORTHO05D006475 2.4e-11 72.8 176 37.5
MELO3C005690.2 Cucumis melo HOM05D002386 ORTHO05D006475 3.1e-11 72.4 186 36.6
arahy.Tifrunner.gnm1.ann1.3CTT0B Arachis hypogaea HOM05D002386 ORTHO05D006475 5.3e-11 71.6 181 35.4
arahy.Tifrunner.gnm1.ann1.6I5Y8L Arachis hypogaea HOM05D002386 ORTHO05D006475 6.9e-11 71.2 181 35.4
Lsat_1_v5_gn_6_5340 Lactuca sativa HOM05D002386 ORTHO05D006475 6.9e-11 71.2 139 40.3
Lj4g0009407 Lotus japonicus HOM05D002386 ORTHO05D006475 9.0e-11 70.9 184 35.3
Peaxi162Scf00074g02011 Petunia axillaris HOM05D002386 ORTHO05D006475 9.0e-11 70.9 182 37.9
Atru.BG.189.p Acer truncatum HOM05D002386 ORTHO05D006475 2.0e-10 69.7 119 40.3
Glyma.05G209250 Glycine max HOM05D002386 ORTHO05D006475 2.0e-10 69.7 186 37.1
Glyma.08G016000 Glycine max HOM05D002386 ORTHO05D006475 4.5e-10 68.6 185 34.6
LjContig00312_ERROPOS870357g0000119 Lotus japonicus HOM05D002386 ORTHO05D006475 1.3e-09 67.0 171 38.0
Phvul.002G158300 Phaseolus vulgaris HOM05D002386 ORTHO05D006475 2.2e-09 66.2 185 34.6
Lalb_Chr16g0390111 Lupinus albus HOM05D002386 ORTHO05D006475 2.9e-09 65.9 188 35.6
Nn1g01575 Nelumbo nucifera HOM05D002386 ORTHO05D006475 3.8e-09 65.5 188 35.6
VMungo1215G1453 Vigna mungo HOM05D002386 ORTHO05D006475 6.5e-09 64.7 185 34.6
SEGI_33325 Sequoiadendron giganteum HOM05D002386 ORTHO05D006475 8.5e-09 64.3 197 34.5
HanXRQChr13g0394521 Helianthus annuus HOM05D002386 ORTHO05D006475 1.1e-08 63.9 147 37.4
CSS0029765 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 1.9e-08 63.2 184 35.3
CSS0033474 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 1.9e-08 63.2 184 35.3
Glyma.11G022700 Glycine max HOM05D002386 ORTHO05D006475 1.9e-08 63.2 185 35.1
CSS0046375 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D006475 2.5e-08 62.8 186 33.9
Ah.07g196380 Amaranthus hybridus HOM05D002386 ORTHO05D006475 3.2e-08 62.4 167 33.5
Glyma.01G220900 Glycine max HOM05D002386 ORTHO05D006475 4.2e-08 62.0 185 34.1
Phvul.002G291100 Phaseolus vulgaris HOM05D002386 ORTHO05D006475 4.2e-08 62.0 170 35.9
HanXRQChr10g0309131 Helianthus annuus HOM05D002386 ORTHO05D006475 7.2e-08 61.2 136 36.8
Actinidia01993 Actinidia chinensis HOM05D002386 ORTHO05D006475 9.3e-08 60.8 183 34.4
VMungo0251G0364 Vigna mungo HOM05D002386 ORTHO05D006475 9.3e-08 60.8 170 37.1
MSTRG.25622 Avicennia marina HOM05D002386 ORTHO05D006475 1.2e-07 60.5 176 33.5
Medtr8g098575 Medicago truncatula HOM05D002386 ORTHO05D006475 1.2e-07 60.5 177 35.0
Hund14828 Selenicereus undatus HOM05D002386 ORTHO05D006475 1.2e-07 60.5 177 36.2
EL10Ac5g12796 Beta vulgaris HOM05D002386 ORTHO05D006475 3.6e-07 58.9 179 32.4
Aqoxy7G00267 Aquilegia oxysepala HOM05D002386 ORTHO05D006475 6.1e-07 58.2 175 34.3
Ca_17514_v3 Cicer arietinum L. HOM05D002386 ORTHO05D006475 6.1e-07 58.2 161 34.8
arahy.Tifrunner.gnm1.ann1.E5IT1X Arachis hypogaea HOM05D002386 ORTHO05D006475 7.9e-07 57.8 158 36.1
Psat7g031760 Pisum sativum HOM05D002386 ORTHO05D006475 7.9e-07 57.8 181 32.6
AUR62010703 Chenopodium quinoa HOM05D002386 ORTHO05D006475 1.0e-06 57.4 176 30.7
FAN25G0463 Fragaria x ananassa HOM05D002386 ORTHO05D008413 1.8e-06 56.6 133 34.6
Rhsim07G0088900 Rhododendron simsii HOM05D002386 ORTHO05D006475 1.8e-06 56.6 140 34.3
PSO478G0747 Papaver somniferum HOM05D002386 ORTHO05D006475 2.3e-06 56.2 39 59.0
PSO782G1050 Papaver somniferum HOM05D002386 ORTHO05D006475 2.3e-06 56.2 39 59.0
AUR62017182 Chenopodium quinoa HOM05D002386 ORTHO05D006475 3.0e-06 55.8 177 29.9
SGA_v2.0_scaffold48G18082 Striga asiatica HOM05D002386 ORTHO05D006475 5.1e-06 55.1 181 30.9
FvH4_3g41580 Fragaria vesca HOM05D002386 ORTHO05D008413 6.7e-06 54.7 132 34.1
FAN11G1107 Fragaria x ananassa HOM05D002386 ORTHO05D008413 6.7e-06 54.7 132 34.1
ATR0680G256 Amborella trichopoda HOM05D002386 ORTHO05D006475 8.7e-06 54.3 43 53.5
Migut.E01078 Erythranthe guttata HOM05D002386 ORTHO05D006475 8.7e-06 54.3 113 35.4


User provided reference genes

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