Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 6.8e-193 677.6 450 100.0
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 3.6e-186 655.2 485 85.8
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 1.7e-175 619.8 485 90.1
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 5.0e-172 608.2 488 87.7
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 4.3e-171 605.1 488 87.7
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 1.7e-148 530.0 493 80.9
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 2.2e-122 443.4 496 72.6
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 1.0e-119 434.5 502 71.9
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 7.2e-118 428.3 503 63.4
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 5.1e-116 422.2 500 69.4
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 5.7e-115 418.7 505 65.9
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 7.9e-109 398.3 504 61.1
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 8.3e-90 335.1 504 59.5
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 1.9e-78 297.4 504 52.6
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 2.4e-57 227.3 484 50.8
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 2.7e-56 223.8 504 52.6
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 6.2e-53 212.6 453 53.9
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.4e-52 211.5 428 48.6
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 4.0e-52 209.9 428 48.6
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 5.2e-52 209.5 472 52.8
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 3.7e-50 203.4 459 52.1
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 6.4e-50 202.6 459 45.8
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 1.9e-49 201.1 429 43.6
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 1.2e-48 198.4 468 43.8
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 2.1e-48 197.6 434 47.7
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 3.5e-48 196.8 435 45.7
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 4.6e-48 196.4 496 43.3
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 3.0e-47 193.7 466 44.4
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 6.6e-47 192.6 491 43.8
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 1.1e-46 191.8 434 47.7
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 2.5e-46 190.7 441 45.6
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 7.3e-46 189.1 412 55.6
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 1.1e-44 185.3 502 44.2
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 1.4e-44 184.9 464 50.0
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 1.8e-44 184.5 453 47.5
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 1.8e-44 184.5 444 47.3
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 5.2e-44 183.0 426 41.5
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 5.2e-44 183.0 482 42.5
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.6e-43 180.6 471 48.8
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 3.4e-43 180.3 433 49.7
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 9.9e-43 178.7 460 50.4
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-42 178.3 453 47.0
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 2.9e-42 177.2 467 49.0
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 4.9e-42 176.4 479 48.2
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 8.4e-42 175.6 483 47.2
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 1.1e-41 175.3 430 51.4
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 7.1e-41 172.6 487 42.1
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.6e-40 171.4 430 51.6
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 6.0e-40 169.5 107 75.7
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 6.0e-40 169.5 424 48.6
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 8.7e-39 165.6 431 52.0
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 1.5e-38 164.9 431 52.0
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 7.3e-38 162.5 499 40.9
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.6e-37 161.4 414 44.7
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 4.8e-37 159.8 437 49.9
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 8.1e-37 159.1 433 50.3
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 2.6e-35 154.1 157 51.0
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 2.9e-34 150.6 155 48.4
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 3.8e-34 150.2 436 44.7
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.4e-33 148.3 381 45.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.5e-32 143.7 150 49.3
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 7.8e-32 142.5 135 51.9
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 3.0e-31 140.6 159 44.7
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 5.1e-31 139.8 158 44.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.5e-30 137.5 377 53.3
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 3.3e-30 137.1 154 46.1
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 6.9e-28 129.4 158 48.7
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 6.4e-26 122.9 436 39.2
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 2.7e-24 117.5 161 47.2
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 6.5e-18 96.3 108 49.1
BcaC04g20378 Brassica carinata HOM05D007897 ORTHO05D032930 2.1e-16 91.3 100 56.0
C09p44300 Brassica napus HOM05D007897 ORTHO05D032930 1.0e-15 89.0 100 55.0
BolC9t57302H Brassica oleracea HOM05D007897 ORTHO05D032930 1.0e-15 89.0 100 55.0
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 2.5e-14 84.3 122 39.3
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.5e-09 67.8 119 37.0
HanXRQChr09g0243531 Helianthus annuus HOM05D007897 ORTHO05D010061 2.3e-07 61.2 84 36.9
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.9e-07 60.5 55 49.1
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 8.7e-07 59.3 119 32.8
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.3e-06 57.4 55 49.1
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 3.3e-06 57.4 115 36.5
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 5.7e-06 56.6 33 78.8
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 9.7e-06 55.8 53 49.1


User provided reference genes

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