Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 1.1e-63 246.5 133 100.0
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 3.7e-46 188.3 106 96.2
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 7.0e-45 184.1 106 94.3
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-40 168.7 107 86.9
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 7.4e-39 164.1 106 85.8
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 2.6e-36 155.6 106 79.2
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 2.5e-34 149.1 112 75.0
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 3.0e-32 142.1 106 69.8
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.5e-31 139.8 90 80.0
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 2.2e-30 136.0 105 70.5
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 8.3e-30 134.0 105 69.5
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 8.3e-30 134.0 103 68.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 3.1e-29 132.1 103 68.0
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 5.3e-29 131.3 74 97.3
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 7.0e-29 131.0 74 97.3
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 7.0e-29 131.0 74 97.3
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.0e-27 127.1 103 67.0
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 5.5e-26 121.3 74 89.2
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 9.4e-26 120.6 105 64.8
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 4.7e-25 118.2 105 61.9
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 4.7e-25 118.2 105 61.9
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 4.7e-25 118.2 102 64.7
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 6.1e-25 117.9 76 81.6
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 8.0e-25 117.5 74 85.1
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 1.0e-24 117.1 122 59.8
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 4.0e-24 115.2 105 61.0
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 9.1e-21 104.0 105 57.1
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.0e-20 102.8 103 49.5
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 7.7e-20 100.9 103 48.5
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 1.0e-19 100.5 79 69.6
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.0e-19 100.5 79 69.6
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.3e-19 100.1 109 49.5
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 8.0e-17 90.9 95 48.4
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 2.3e-16 89.4 95 48.4
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 5.7e-15 84.7 55 81.8
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 3.7e-14 82.0 100 45.0
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 5.4e-13 78.2 100 42.0
BraA03t15577Z Brassica rapa HOM05D052069 ORTHO05D004680 1.2e-12 77.0 44 84.1
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.7e-12 75.9 106 35.8
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 2.7e-12 75.9 101 41.6
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 3.5e-12 75.5 101 42.6
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 7.8e-12 74.3 100 42.0
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 7.8e-12 74.3 107 37.4
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 1.0e-11 73.9 133 44.4
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.9e-11 72.4 103 38.8
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 5.0e-11 71.6 100 37.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.1e-10 70.5 106 37.7
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.5e-10 70.1 104 37.5
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.9e-10 69.7 106 35.8
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.9e-10 69.7 97 39.2
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 4.3e-10 68.6 109 36.7
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 7.3e-10 67.8 100 37.0
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 3.6e-09 65.5 102 34.3
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 6.1e-09 64.7 116 32.8
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 6.1e-09 64.7 103 36.9
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 8.0e-09 64.3 101 34.7
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.0e-08 63.9 108 38.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.4e-08 63.5 108 37.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.4e-08 63.5 108 36.1
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.8e-08 63.2 101 35.6
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 3.1e-08 62.4 101 35.6
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 6.8e-08 61.2 109 32.1
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 8.9e-08 60.8 101 36.6
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.2e-07 60.5 101 34.7
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.2e-07 60.5 100 33.0
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.2e-07 60.5 106 34.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.0e-07 59.7 102 35.3
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.0e-07 59.7 97 38.1
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 2.0e-07 59.7 101 34.7
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 2.0e-07 59.7 104 32.7
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 3.4e-07 58.9 101 37.6
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 3.4e-07 58.9 100 34.0
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 3.4e-07 58.9 100 34.0
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 3.4e-07 58.9 101 36.6
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.4e-07 58.5 101 34.7
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 4.4e-07 58.5 96 35.4
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 4.4e-07 58.5 101 33.7
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 4.4e-07 58.5 100 33.0
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.8e-07 58.2 101 34.7
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 5.8e-07 58.2 100 33.0
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 7.5e-07 57.8 97 38.1
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.5e-07 57.8 102 34.3
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.5e-07 57.8 102 34.3
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.5e-07 57.8 102 34.3
BraA05t22333Z Brassica rapa HOM05D052069 ORTHO05D004680 9.8e-07 57.4 33 84.8
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 9.8e-07 57.4 101 32.7
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.3e-06 57.0 106 34.0
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.7e-06 56.6 100 32.0
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.2e-06 56.2 101 30.7
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 2.2e-06 56.2 100 31.0
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.9e-06 55.8 96 35.4
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 6.4e-06 54.7 106 32.1
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 8.3e-06 54.3 103 32.0
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 8.3e-06 54.3 99 32.3
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 8.3e-06 54.3 99 31.3


User provided reference genes

Program Settings