Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 8.5e-75 283.9 176 100.0
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 8.5e-75 283.9 176 100.0
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 2.5e-74 282.3 176 99.4
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 7.2e-74 280.8 176 98.3
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 7.7e-68 260.8 206 82.5
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 3.2e-66 255.4 177 90.4
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 2.4e-61 239.2 203 78.3
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 3.5e-60 235.3 179 86.6
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 1.0e-59 233.8 203 76.8
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 2.3e-59 232.6 185 80.5
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 1.5e-58 229.9 180 83.9
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 4.3e-58 228.4 180 82.8
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 5.2e-48 194.9 178 62.9
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 1.0e-35 154.1 181 54.7
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 2.4e-32 142.9 193 47.2
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.2e-31 140.6 190 47.4
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 1.1e-29 134.0 192 46.9
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 2.4e-29 132.9 186 47.3
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.4e-29 132.9 193 46.1
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 2.4e-29 132.9 189 46.0
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 3.2e-29 132.5 186 47.3
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 7.1e-29 131.3 192 45.8
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 9.2e-29 131.0 192 44.8
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 2.7e-28 129.4 191 46.1
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 3.5e-28 129.0 185 45.4
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 1.0e-27 127.5 192 45.8
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 1.3e-27 127.1 189 44.4
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.7e-27 126.7 185 46.5
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 2.3e-27 126.3 191 45.0
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 3.9e-27 125.6 190 44.7
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.9e-27 125.6 190 44.2
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.9e-27 125.6 190 44.2
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 5.1e-27 125.2 191 44.0
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 6.6e-27 124.8 192 44.8
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 6.6e-27 124.8 191 43.5
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 8.7e-27 124.4 193 44.6
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 8.7e-27 124.4 193 44.6
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 1.1e-26 124.0 185 44.3
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 1.1e-26 124.0 191 42.4
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 1.5e-26 123.6 189 43.4
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.5e-26 123.6 187 46.5
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.3e-26 122.5 185 45.4
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 4.3e-26 122.1 193 44.6
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 9.6e-26 120.9 187 42.8
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 9.6e-26 120.9 193 43.5
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 9.6e-26 120.9 187 43.3
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 1.2e-25 120.6 191 42.4
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 1.6e-25 120.2 175 43.4
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.6e-25 120.2 185 44.3
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 1.6e-25 120.2 179 43.6
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 2.1e-25 119.8 193 45.1
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 6.2e-25 118.2 175 42.9
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 8.1e-25 117.9 182 44.0
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 8.1e-25 117.9 192 43.8
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 8.1e-25 117.9 192 42.7
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.1e-24 117.5 193 43.0
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 1.1e-24 117.5 197 38.6
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.1e-24 117.5 192 43.2
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 1.4e-24 117.1 186 41.9
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 1.4e-24 117.1 191 41.4
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.4e-24 117.1 192 41.7
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 1.8e-24 116.7 178 43.3
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 4.0e-24 115.5 200 41.0
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 4.0e-24 115.5 190 40.0
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 5.2e-24 115.2 190 40.5
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 9.0e-24 114.4 197 38.6
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 4.4e-23 112.1 191 41.4
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 4.4e-23 112.1 192 39.6
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 4.4e-23 112.1 190 41.1
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 5.8e-23 111.7 176 40.9
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 2.9e-22 109.4 186 39.2
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.8e-22 109.0 188 42.0
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 1.9e-21 106.7 177 39.5
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 4.2e-21 105.5 192 38.5
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 5.4e-21 105.1 191 41.4
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 7.1e-21 104.8 188 41.0
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 7.1e-21 104.8 177 49.7
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 2.7e-20 102.8 188 40.4
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 6.0e-20 101.7 176 39.2
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.0e-19 100.9 188 39.4
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 1.3e-19 100.5 188 39.4
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.7e-19 100.1 181 39.8
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 3.0e-19 99.4 188 39.4
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 1.1e-18 97.4 175 41.1
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.1e-18 97.4 184 40.8
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.1e-18 97.4 188 38.8
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 1.5e-18 97.1 185 40.5
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 1.9e-18 96.7 184 34.2
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 2.5e-18 96.3 188 37.8
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 4.3e-18 95.5 177 36.7
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 4.3e-18 95.5 177 37.9
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 7.3e-18 94.7 185 41.1
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 9.6e-18 94.4 181 38.1
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 9.6e-18 94.4 190 34.7
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 1.3e-17 94.0 189 38.6
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 3.6e-17 92.4 189 36.5
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 4.8e-17 92.0 189 35.4
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 1.4e-16 90.5 190 36.3
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 1.8e-16 90.1 180 36.1
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 4.0e-16 89.0 188 38.3
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 5.3e-16 88.6 188 37.8
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 2.0e-15 86.7 199 32.2
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 2.0e-15 86.7 188 37.2
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.0e-15 86.7 188 37.8
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 4.5e-15 85.5 194 36.1
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 9.9e-15 84.3 188 33.0
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 2.2e-14 83.2 185 35.7
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 3.8e-14 82.4 207 34.3
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 4.9e-14 82.0 194 30.4
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 4.9e-14 82.0 181 33.7
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 6.4e-14 81.6 183 37.2
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 9.3e-13 77.8 166 31.9
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 1.2e-12 77.4 194 32.5
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.6e-12 77.0 191 34.6
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.6e-12 77.0 187 33.7
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 2.1e-12 76.6 179 36.3
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 1.0e-11 74.3 180 36.1
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.0e-11 74.3 183 35.0
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.0e-11 74.3 168 36.9
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.3e-11 73.2 184 34.2
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 5.1e-11 72.0 188 32.4
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 6.7e-11 71.6 176 34.1
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 2.5e-10 69.7 105 43.8
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 7.4e-10 68.2 170 33.5
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 2.8e-09 66.2 182 30.8
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 6.9e-08 61.6 160 29.4
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 1.2e-07 60.8 37 70.3
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 5.8e-07 58.5 165 32.7
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 9.9e-07 57.8 165 30.3
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 1.3e-06 57.4 106 39.6


User provided reference genes

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