Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 3.0e-81 305.1 147 100.0
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 1.9e-80 302.4 147 99.3
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 2.1e-79 298.9 147 98.0
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 4.0e-78 294.7 147 95.9
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 6.9e-78 293.9 148 97.3
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 1.4e-75 286.2 147 93.9
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 2.4e-70 268.9 147 89.8
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 2.0e-69 265.8 147 87.1
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 4.5e-69 264.6 147 86.4
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 4.5e-69 264.6 147 87.1
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 8.4e-68 260.4 147 85.0
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 8.4e-68 260.4 147 85.7
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 3.7e-63 245.0 147 80.3
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 2.6e-61 238.8 146 76.0
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 2.6e-61 238.8 146 76.0
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 1.0e-60 236.9 146 76.7
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.3e-60 236.5 146 76.7
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 3.8e-60 235.0 146 74.7
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 8.5e-60 233.8 146 75.3
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 1.1e-59 233.4 148 74.3
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.5e-59 232.3 146 75.3
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 4.2e-59 231.5 146 74.0
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 9.4e-59 230.3 146 74.0
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 2.1e-58 229.2 133 77.4
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.6e-58 228.4 146 74.0
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 5.1e-57 224.6 146 74.0
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 8.8e-57 223.8 142 74.6
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 8.8e-57 223.8 144 72.2
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.1e-56 223.4 143 75.5
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 3.3e-56 221.9 146 70.5
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 3.3e-56 221.9 140 74.3
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 3.3e-56 221.9 146 69.2
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 5.7e-56 221.1 146 71.2
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 7.4e-56 220.7 149 70.5
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 1.3e-55 219.9 148 70.3
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 1.7e-55 219.5 146 69.9
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 2.8e-55 218.8 142 72.5
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 4.8e-55 218.0 139 73.4
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 6.3e-55 217.6 146 71.2
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 1.1e-54 216.9 146 70.5
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 1.4e-54 216.5 146 71.2
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.8e-54 216.1 144 69.4
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 2.4e-54 215.7 138 73.9
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 2.4e-54 215.7 144 70.1
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 2.4e-54 215.7 140 70.7
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 3.1e-54 215.3 144 70.1
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 3.1e-54 215.3 138 71.7
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 3.1e-54 215.3 146 69.2
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 3.1e-54 215.3 147 68.0
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 3.1e-54 215.3 140 70.7
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 4.1e-54 214.9 140 71.4
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 5.3e-54 214.5 132 76.5
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 5.3e-54 214.5 146 67.8
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 6.9e-54 214.2 142 71.1
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 6.9e-54 214.2 141 73.8
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 9.1e-54 213.8 145 68.3
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 1.2e-53 213.4 122 80.3
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 1.2e-53 213.4 122 80.3
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.2e-53 213.4 145 67.6
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 1.5e-53 213.0 145 67.6
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 1.5e-53 213.0 146 67.8
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 2.0e-53 212.6 140 70.0
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 2.0e-53 212.6 129 75.2
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 2.0e-53 212.6 136 73.5
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 2.0e-53 212.6 146 67.1
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 2.6e-53 212.2 146 67.8
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 3.4e-53 211.8 123 79.7
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 3.4e-53 211.8 124 78.2
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 4.5e-53 211.5 125 76.8
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 5.9e-53 211.1 125 77.6
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 5.9e-53 211.1 145 67.6
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 7.7e-53 210.7 123 75.6
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 7.7e-53 210.7 122 81.1
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 7.7e-53 210.7 124 77.4
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 1.0e-52 210.3 140 69.3
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.3e-52 209.9 124 76.6
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 1.3e-52 209.9 140 69.3
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 1.7e-52 209.5 140 68.6
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.7e-52 209.5 140 69.3
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 1.7e-52 209.5 146 66.4
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 1.7e-52 209.5 140 70.0
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 2.2e-52 209.1 140 69.3
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.9e-52 208.8 140 69.3
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 3.8e-52 208.4 140 69.3
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 3.8e-52 208.4 146 66.4
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.0e-52 208.0 147 66.7
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 5.0e-52 208.0 121 79.3
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 6.5e-52 207.6 146 67.8
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 8.5e-52 207.2 140 68.6
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 1.1e-51 206.8 136 71.3
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 2.5e-51 205.7 146 65.8
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.2e-51 204.9 147 65.3
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 7.2e-51 204.1 130 72.3
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 7.2e-51 204.1 183 55.7
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 9.4e-51 203.8 170 61.8
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.6e-50 203.0 124 74.2
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 1.0e-49 200.3 137 65.0
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 1.0e-49 200.3 139 66.9
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 6.7e-49 197.6 134 66.4
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 2.0e-48 196.1 135 66.7
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 4.4e-48 194.9 137 64.2
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 7.4e-48 194.1 135 66.7
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 3.7e-47 191.8 137 67.2
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 4.8e-47 191.4 135 68.9
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 6.3e-47 191.0 207 48.8
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 3.1e-46 188.7 179 57.0
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 2.6e-45 185.7 124 71.0
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 2.2e-44 182.6 121 70.2
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 2.2e-44 182.6 133 62.4
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 2.0e-40 169.5 108 75.0
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 2.9e-36 155.6 94 77.7
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 5.0e-36 154.8 94 75.5
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 1.9e-35 152.9 92 75.0
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 7.2e-35 151.0 99 69.7
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 1.2e-32 143.7 94 69.1
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 7.5e-32 141.0 113 62.8
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.5e-29 132.1 95 61.1
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 8.6e-20 100.9 120 48.3
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 1.6e-18 96.7 66 75.8
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 2.1e-10 69.7 42 64.3
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 6.1e-10 68.2 53 60.4
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.0e-09 67.4 35 91.4
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 1.8e-09 66.6 41 68.3
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 2.0e-08 63.2 33 84.8
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 2.0e-08 63.2 33 84.8
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.9e-06 56.6 63 47.6


User provided reference genes

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