Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 5.7e-57 224.6 126 100.0
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 5.7e-57 224.6 126 100.0
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 4.1e-55 218.4 126 88.1
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 1.0e-53 213.8 126 86.5
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 1.0e-53 213.8 126 86.5
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 8.3e-48 194.1 126 84.9
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 7.0e-47 191.0 129 84.5
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 9.2e-47 190.7 126 72.2
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 9.2e-47 190.7 127 80.3
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 4.5e-46 188.3 126 85.7
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.3e-45 186.8 95 88.4
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 2.9e-45 185.7 126 75.4
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 6.6e-45 184.5 127 83.5
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 6.6e-45 184.5 127 83.5
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.5e-44 183.3 126 77.8
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 2.5e-44 182.6 127 82.7
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 4.3e-44 181.8 130 79.2
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.1e-43 179.5 128 81.2
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 3.2e-31 139.0 129 69.0
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 7.0e-31 137.9 128 68.8
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 7.0e-31 137.9 128 68.8
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 1.2e-30 137.1 129 69.0
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 1.3e-29 133.7 125 65.6
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 9.5e-28 127.5 126 57.9
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.2e-27 127.1 129 55.8
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 5.2e-26 121.7 122 68.0
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 1.3e-24 117.1 129 55.0
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 1.3e-24 117.1 129 55.0
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 6.0e-22 108.2 82 67.1
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 1.0e-21 107.5 82 67.1
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.3e-21 106.3 82 67.1
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.3e-21 106.3 82 64.6
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 3.9e-21 105.5 123 50.4
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 1.5e-20 103.6 82 64.6
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 1.5e-20 103.6 82 64.6
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 1.5e-20 103.6 122 49.2
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 1.2e-19 100.5 82 63.4
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 6.2e-19 98.2 75 65.3
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.8e-18 96.7 85 57.6
BcaC01g06349 Brassica carinata HOM05D004357 ORTHO05D005064 4.0e-18 95.5 118 62.7
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 2.0e-17 93.2 76 61.8
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 1.3e-16 90.5 57 68.4
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 2.9e-16 89.4 76 59.2
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.9e-16 89.4 73 60.3
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 3.8e-16 89.0 75 60.0
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 3.8e-16 89.0 75 60.0
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 3.8e-16 89.0 75 60.0
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 3.8e-16 89.0 76 59.2
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 4.9e-16 88.6 75 62.7
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.1e-15 87.4 91 56.0
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 4.2e-15 85.5 75 60.0
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 4.2e-15 85.5 91 49.5
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 1.2e-14 84.0 73 61.6
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 1.6e-14 83.6 75 56.0
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 2.7e-14 82.8 73 61.6
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 2.7e-14 82.8 121 53.7
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.5e-14 82.4 123 41.5
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 7.8e-14 81.3 71 62.0
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 7.8e-14 81.3 130 41.5
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.0e-13 80.9 93 51.6
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 1.0e-13 80.9 73 58.9
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 1.0e-13 80.9 123 42.3
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 1.3e-13 80.5 73 60.3
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.3e-13 80.5 121 52.9
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 1.7e-13 80.1 95 49.5
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 2.3e-13 79.7 73 56.2
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.3e-13 79.7 125 44.8
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 3.0e-13 79.3 73 54.8
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.0e-13 79.3 73 54.8
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.0e-13 79.3 73 54.8
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.0e-13 79.3 73 54.8
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.0e-13 79.3 73 54.8
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 3.0e-13 79.3 73 60.3
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 3.9e-13 79.0 73 52.1
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.9e-13 79.0 126 44.4
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 3.9e-13 79.0 73 58.9
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.9e-13 79.0 76 56.6
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.9e-13 79.0 73 57.5
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 3.9e-13 79.0 123 42.3
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 3.9e-13 79.0 93 47.3
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 6.6e-13 78.2 87 49.4
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 6.6e-13 78.2 73 54.8
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 6.6e-13 78.2 126 43.7
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 6.6e-13 78.2 71 63.4
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 8.7e-13 77.8 73 53.4
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 8.7e-13 77.8 73 58.9
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 1.1e-12 77.4 71 59.2
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 1.1e-12 77.4 73 58.9
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 1.1e-12 77.4 73 61.6
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 1.9e-12 76.6 80 52.5
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.9e-12 76.6 122 43.4
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 1.9e-12 76.6 73 57.5
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 1.9e-12 76.6 84 48.8
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 2.5e-12 76.3 75 53.3
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 2.5e-12 76.3 71 57.7
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 2.5e-12 76.3 71 59.2
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.5e-12 76.3 80 52.5
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 3.3e-12 75.9 75 52.0
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 5.6e-12 75.1 73 53.4
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 7.3e-12 74.7 76 53.9
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 7.3e-12 74.7 117 40.2
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 1.2e-11 73.9 76 50.0
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 2.1e-11 73.2 73 54.8
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 2.1e-11 73.2 73 56.2
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 2.8e-11 72.8 120 41.7
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 3.6e-11 72.4 79 49.4
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 3.6e-11 72.4 78 48.7
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 3.6e-11 72.4 78 48.7
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 4.7e-11 72.0 129 41.9
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 4.7e-11 72.0 73 56.2
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 4.7e-11 72.0 76 47.4
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 4.7e-11 72.0 73 50.7
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 4.7e-11 72.0 73 54.8
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 4.7e-11 72.0 73 54.8
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 8.1e-11 71.2 71 52.1
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 1.1e-10 70.9 123 38.2
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 1.8e-10 70.1 129 38.8
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.4e-10 69.7 126 40.5
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 3.1e-10 69.3 73 52.1
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 5.2e-10 68.6 76 52.6
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 5.2e-10 68.6 131 36.6
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 5.2e-10 68.6 73 49.3
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 9.0e-10 67.8 72 51.4
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 1.2e-09 67.4 93 45.2
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.5e-09 67.0 75 46.7
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.6e-09 66.2 73 50.7
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 2.6e-09 66.2 68 52.9
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 2.6e-09 66.2 73 47.9
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 5.8e-09 65.1 77 55.8
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 5.8e-09 65.1 129 32.6
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 7.6e-09 64.7 73 49.3
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 9.9e-09 64.3 73 49.3
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 9.9e-09 64.3 73 49.3
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 1.3e-08 63.9 75 41.3
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.7e-08 63.5 73 47.9
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 2.2e-08 63.2 76 51.3
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 2.2e-08 63.2 56 57.1
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 2.9e-08 62.8 58 55.2
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 4.9e-08 62.0 74 44.6
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 8.4e-08 61.2 58 53.4
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 1.1e-07 60.8 58 53.4
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 1.4e-07 60.5 122 38.5
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 1.4e-07 60.5 98 38.8
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.4e-07 60.5 73 42.5
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.4e-07 60.5 75 41.3
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 1.9e-07 60.1 86 38.4
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.9e-07 60.1 73 49.3
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.4e-07 59.7 73 42.5
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 2.4e-07 59.7 74 40.5
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 3.2e-07 59.3 71 45.1
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 1.2e-06 57.4 106 36.8
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 1.2e-06 57.4 70 41.4
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 2.7e-06 56.2 100 40.0
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 4.6e-06 55.5 73 47.9
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 6.0e-06 55.1 70 44.3
BcaB01g04367 Brassica carinata HOM05D004357 ORTHO05D005064 7.8e-06 54.7 30 73.3


User provided reference genes

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