Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 6.9e-37 156.8 77 100.0
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 6.9e-37 156.8 77 100.0
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 9.9e-36 152.9 77 96.1
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 2.2e-35 151.8 77 94.8
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 3.8e-35 151.0 77 94.8
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 2.4e-34 148.3 78 94.9
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 1.8e-32 142.1 78 91.0
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 1.8e-32 142.1 78 91.0
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 3.9e-32 141.0 78 91.0
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 6.7e-32 140.2 78 91.0
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 1.1e-31 139.4 79 89.9
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 1.5e-31 139.0 77 89.6
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 7.4e-31 136.7 77 87.0
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 7.4e-31 136.7 77 87.0
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 9.6e-31 136.3 77 87.0
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 2.1e-30 135.2 77 88.3
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 8.1e-30 133.3 77 85.7
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 1.2e-28 129.4 77 85.7
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 1.6e-25 119.0 77 77.9
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 1.0e-24 116.3 76 75.0
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.3e-24 115.9 64 85.9
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.8e-24 115.5 64 84.4
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.8e-24 115.5 64 84.4
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.8e-24 115.5 64 84.4
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 3.0e-24 114.8 68 75.0
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.9e-24 114.4 69 76.8
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 5.1e-24 114.0 64 82.8
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 5.1e-24 114.0 64 84.4
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 5.1e-24 114.0 68 79.4
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.1e-23 112.8 69 75.4
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.1e-23 112.8 64 82.8
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 1.5e-23 112.5 75 72.0
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 1.5e-23 112.5 64 81.2
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.5e-23 112.5 68 76.5
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.5e-23 112.5 64 81.2
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 1.9e-23 112.1 64 81.2
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 1.9e-23 112.1 64 81.2
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 3.3e-23 111.3 64 76.6
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 4.3e-23 110.9 67 85.1
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 4.3e-23 110.9 70 75.7
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 4.3e-23 110.9 68 76.5
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 5.7e-23 110.5 70 74.3
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 5.7e-23 110.5 69 78.3
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 7.4e-23 110.2 69 78.3
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 7.4e-23 110.2 68 75.0
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 9.6e-23 109.8 62 79.0
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.3e-22 109.4 64 79.7
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 1.3e-22 109.4 72 75.0
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 1.6e-22 109.0 75 70.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 2.1e-22 108.6 68 72.1
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 2.8e-22 108.2 70 75.7
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 2.8e-22 108.2 68 73.5
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 3.7e-22 107.8 64 78.1
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 3.7e-22 107.8 68 77.9
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 4.8e-22 107.5 64 78.1
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 4.8e-22 107.5 58 86.2
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 6.3e-22 107.1 66 78.8
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 6.3e-22 107.1 68 76.5
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 8.2e-22 106.7 60 76.7
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 8.2e-22 106.7 77 71.4
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.1e-21 106.3 60 76.7
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 1.1e-21 106.3 58 84.5
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.1e-21 106.3 66 78.8
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 69 69.6
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.4e-21 105.9 58 84.5
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-21 105.5 60 75.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-21 105.5 60 75.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-21 105.5 60 75.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-21 105.5 60 75.0
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.8e-21 105.5 60 75.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.8e-21 105.5 68 76.5
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.8e-21 105.5 68 76.5
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.8e-21 105.5 60 75.0
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.8e-21 105.5 68 77.9
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 2.4e-21 105.1 58 82.8
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 2.4e-21 105.1 68 70.6
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.1e-21 104.8 66 75.8
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.1e-21 104.8 66 75.8
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 5.3e-21 104.0 58 81.0
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 6.9e-21 103.6 64 71.9
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 6.9e-21 103.6 64 71.9
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 6.9e-21 103.6 75 69.3
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 6.9e-21 103.6 75 69.3
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 6.9e-21 103.6 66 74.2
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 6.9e-21 103.6 58 82.8
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 9.0e-21 103.2 63 74.6
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.5e-20 102.4 70 72.9
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.5e-20 102.4 70 72.9
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.5e-20 102.4 66 72.7
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 1.5e-20 102.4 64 71.9
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 2.0e-20 102.1 58 77.6
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 2.6e-20 101.7 68 69.1
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 3.4e-20 101.3 60 73.3
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 5.9e-20 100.5 76 67.1
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 7.6e-20 100.1 70 70.0
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 1.0e-19 99.8 70 71.4
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.9e-19 98.2 75 64.0
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 6.5e-19 97.1 75 64.0
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 6.5e-19 97.1 75 64.0
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.1e-18 96.3 66 65.2
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 2.5e-18 95.1 67 71.6
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 2.5e-18 95.1 54 79.6
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 2.5e-18 95.1 56 80.4
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 4.2e-18 94.4 68 63.2
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 4.2e-18 94.4 64 70.3
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 7.2e-18 93.6 69 66.7
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.2e-17 92.8 77 57.1
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 3.6e-17 91.3 50 80.0
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 6.7e-16 87.0 64 62.5
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 3.3e-15 84.7 52 75.0
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 5.7e-07 57.4 52 53.8
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 2.2e-06 55.5 58 41.4


User provided reference genes

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