Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 4.0e-41 171.0 87 100.0
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 1.9e-27 125.6 84 81.0
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 4.9e-23 110.9 86 70.9
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 4.9e-23 110.9 86 70.9
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 1.1e-22 109.8 82 73.2
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 1.4e-22 109.4 81 74.1
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 1.4e-22 109.4 81 74.1
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.4e-22 109.4 81 75.3
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 2.4e-22 108.6 81 75.3
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 4.1e-22 107.8 81 74.1
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 5.4e-22 107.5 81 74.1
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 7.1e-22 107.1 81 74.1
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 1.6e-21 105.9 81 72.8
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 4.6e-21 104.4 81 71.6
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 7.8e-21 103.6 81 70.4
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 5.1e-20 100.9 79 72.2
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 9.5e-19 96.7 80 65.0
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 1.6e-18 95.9 80 63.8
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 6.2e-18 94.0 80 62.5
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 6.2e-18 94.0 80 62.5
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.4e-17 92.8 83 60.2
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.8e-17 92.4 80 62.5
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 2.4e-17 92.0 80 60.0
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 2.4e-17 92.0 80 62.5
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 3.1e-17 91.7 80 61.2
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 3.1e-17 91.7 80 61.2
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 4.0e-17 91.3 80 62.5
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 4.0e-17 91.3 80 62.5
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 5.2e-17 90.9 80 60.0
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 5.2e-17 90.9 80 61.2
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 8.9e-17 90.1 80 60.0
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 8.9e-17 90.1 80 60.0
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 8.9e-17 90.1 80 58.8
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.2e-16 89.7 80 58.8
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.2e-16 89.7 80 60.0
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 1.5e-16 89.4 80 60.0
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 1.5e-16 89.4 80 61.2
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.0e-16 89.0 79 62.0
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 2.0e-16 89.0 80 58.8
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 3.4e-16 88.2 79 59.5
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 4.4e-16 87.8 79 59.5
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 4.4e-16 87.8 79 60.8
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 4.4e-16 87.8 80 57.5
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 5.8e-16 87.4 79 60.8
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 5.8e-16 87.4 80 57.5
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 7.6e-16 87.0 80 58.8
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 7.6e-16 87.0 78 62.8
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 7.6e-16 87.0 80 60.0
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 9.9e-16 86.7 80 61.2
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 9.9e-16 86.7 79 59.5
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 1.3e-15 86.3 79 60.8
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 1.3e-15 86.3 79 59.5
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-15 85.9 79 60.8
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 1.7e-15 85.9 80 57.5
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 2.2e-15 85.5 79 58.2
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 2.9e-15 85.1 79 57.0
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 2.9e-15 85.1 79 57.0
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 3.8e-15 84.7 79 59.5
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 3.8e-15 84.7 79 58.2
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 3.8e-15 84.7 80 57.5
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 3.8e-15 84.7 79 59.5
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 4.9e-15 84.3 84 52.4
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 4.9e-15 84.3 79 57.0
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 6.4e-15 84.0 79 57.0
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 6.4e-15 84.0 81 56.8
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 6.4e-15 84.0 80 56.2
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 8.4e-15 83.6 78 57.7
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 1.1e-14 83.2 48 85.4
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 1.9e-14 82.4 80 56.2
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 1.9e-14 82.4 80 56.2
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 1.9e-14 82.4 78 56.4
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 1.9e-14 82.4 78 57.7
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 1.9e-14 82.4 79 58.2
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 1.9e-14 82.4 79 58.2
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.9e-14 82.4 79 58.2
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 3.2e-14 81.6 79 54.4
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 3.2e-14 81.6 79 57.0
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 4.2e-14 81.3 79 55.7
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 5.4e-14 80.9 80 55.0
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 5.4e-14 80.9 79 59.5
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 7.1e-14 80.5 79 55.7
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 1.2e-13 79.7 80 55.0
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 1.2e-13 79.7 79 55.7
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 1.2e-13 79.7 79 55.7
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 1.2e-13 79.7 79 53.2
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.2e-13 79.7 80 56.2
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 1.6e-13 79.3 77 55.8
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 3.5e-13 78.2 80 51.2
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.6e-13 77.8 69 65.2
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 1.3e-12 76.3 74 55.4
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.7e-12 75.9 79 50.6
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 3.9e-12 74.7 78 50.0
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 5.1e-12 74.3 79 55.7
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 5.1e-12 74.3 77 51.9
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.5e-11 72.0 44 75.0
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 2.5e-11 72.0 79 54.4
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 1.6e-10 69.3 77 50.6
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 6.9e-09 63.9 92 39.1
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 4.4e-08 61.2 62 54.8
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 3.8e-07 58.2 70 50.0
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 4.9e-07 57.8 80 42.5
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 8.4e-07 57.0 78 38.5
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.9e-06 55.8 80 38.8
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 7.1e-06 53.9 80 38.8


User provided reference genes

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