Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 8.8e-182 640.2 331 100.0
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 8.8e-182 640.2 331 100.0
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 8.8e-182 640.2 331 100.0
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.7e-169 599.4 332 94.9
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.7e-169 599.4 332 94.9
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 4.0e-158 561.6 331 89.4
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.7e-145 519.6 335 85.1
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.3e-144 515.0 341 82.7
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.8e-143 512.3 341 82.4
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.4e-142 510.0 341 82.1
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 5.8e-141 504.6 330 83.3
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 5.4e-139 498.0 370 75.9
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 9.2e-139 497.3 341 80.6
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.6e-138 496.5 335 80.0
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.3e-137 492.7 379 73.1
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 3.1e-134 482.3 331 80.4
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.4e-131 473.4 330 77.9
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.6e-122 443.4 299 79.9
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 2.4e-115 419.5 342 66.4
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.8e-102 376.7 332 61.4
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.7e-100 370.2 329 60.8
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.9e-99 366.7 334 61.7
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 4.6e-98 362.1 329 59.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 6.1e-98 361.7 338 60.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.0e-97 360.9 333 60.7
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.6e-95 353.6 338 58.9
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 8.2e-95 351.3 338 57.7
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.1e-94 350.9 341 58.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.4e-94 350.5 338 58.3
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 6.9e-94 348.2 338 58.6
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 6.9e-94 348.2 337 56.1
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.2e-92 343.2 338 58.6
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 2.9e-92 342.8 338 57.1
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.8e-92 342.4 338 56.5
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 8.5e-92 341.3 331 55.6
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.1e-91 340.9 335 57.9
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.4e-91 340.5 338 56.2
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.9e-91 340.1 338 55.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.6e-90 337.0 337 57.6
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-90 337.0 341 56.3
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.6e-90 337.0 338 55.9
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.7e-90 336.3 338 56.5
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 6.1e-90 335.1 332 54.5
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.8e-89 333.6 331 56.2
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.3e-89 333.2 340 55.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.3e-89 333.2 341 55.7
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.9e-89 332.4 333 56.5
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 8.8e-89 331.3 331 54.4
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.1e-88 330.9 335 55.8
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.5e-88 330.5 334 53.9
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.0e-88 330.1 337 54.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 2.5e-88 329.7 338 55.3
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 4.3e-88 328.9 331 54.1
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.1e-86 324.3 333 55.6
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.1e-86 324.3 334 53.0
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.4e-86 323.9 332 56.0
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 5.3e-86 322.0 339 54.6
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 9.1e-86 321.2 333 56.2
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 9.1e-86 321.2 339 54.3
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.2e-85 320.9 339 54.3
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.0e-85 320.1 338 53.8
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.6e-85 319.7 339 55.5
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 7.7e-85 318.2 339 53.7
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.2e-84 316.6 335 54.9
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.2e-84 316.6 343 54.5
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 3.8e-84 315.8 332 55.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.5e-84 314.7 338 54.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 8.5e-84 314.7 339 52.8
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.5e-84 314.7 337 55.8
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.5e-83 313.2 330 52.7
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.5e-83 313.2 334 52.4
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 4.2e-83 312.4 338 52.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-82 310.8 339 53.7
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-82 310.8 341 53.7
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.6e-82 310.5 337 51.0
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.1e-82 308.5 338 53.0
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 7.9e-82 308.1 337 51.3
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.4e-81 307.4 331 52.9
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.8e-81 307.0 289 57.4
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.8e-81 307.0 341 53.4
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 2.3e-81 306.6 273 59.0
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 6.7e-81 305.1 333 53.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.5e-80 303.9 340 51.8
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.4e-80 302.4 338 52.1
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.7e-79 300.4 343 51.0
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.2e-79 300.1 338 50.3
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.2e-79 300.1 337 51.0
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.2e-79 300.1 337 52.2
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 3.7e-79 299.3 336 51.8
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 6.3e-79 298.5 339 51.0
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 1.1e-78 297.7 297 54.9
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.8e-78 297.0 334 50.9
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 3.1e-78 296.2 333 52.9
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 3.1e-78 296.2 347 49.6
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 4.1e-78 295.8 401 45.1
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 4.1e-78 295.8 330 51.5
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.2e-77 294.3 338 50.0
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 2.6e-77 293.1 359 50.7
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.7e-76 290.4 352 50.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 3.8e-76 289.3 337 50.4
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 5.0e-76 288.9 281 54.1
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 6.5e-76 288.5 342 50.6
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 2.5e-75 286.6 336 52.1
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 5.5e-75 285.4 340 49.4
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 7.2e-75 285.0 373 49.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.6e-74 283.9 320 50.3
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.7e-74 283.1 336 49.4
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 6.1e-74 282.0 338 51.5
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.0e-73 279.6 343 47.8
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 6.7e-73 278.5 342 48.8
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-72 277.7 343 47.8
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.5e-72 277.3 343 47.8
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.6e-72 276.6 331 49.2
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 6.3e-71 271.9 348 47.4
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 2.4e-70 270.0 223 62.8
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.2e-69 267.7 329 50.2
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 2.0e-69 266.9 333 48.3
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.7e-69 266.5 334 47.6
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 5.9e-69 265.4 329 47.4
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.9e-67 260.4 333 47.4
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.5e-67 260.0 313 50.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.2e-67 259.2 330 46.4
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 7.2e-67 258.5 331 48.3
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 7.2e-67 258.5 333 47.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.1e-66 256.9 338 46.2
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.0e-65 254.6 335 47.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.0e-65 253.1 336 47.3
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 5.7e-64 248.8 255 55.7
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.3e-63 247.7 291 50.5
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.7e-60 237.3 324 46.6
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.8e-60 236.1 250 54.8
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.0e-60 235.7 179 67.0
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 8.5e-60 235.0 336 42.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.9e-59 233.8 237 53.2
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.4e-57 227.6 248 50.8
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.8e-54 217.2 307 43.0
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.0e-53 213.8 240 53.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.0e-53 213.8 321 44.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.5e-53 213.0 336 42.0
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 8.6e-52 208.4 325 41.2
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.8e-49 200.7 237 47.3
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 4.9e-47 192.6 163 62.6
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 3.2e-46 189.9 178 55.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.7e-44 184.1 164 56.1
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.2e-42 177.9 209 51.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.4e-41 174.5 204 53.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.9e-41 171.8 174 56.9
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-40 170.6 204 54.4
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-40 170.6 205 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.9e-39 166.8 317 38.8
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.4e-38 162.5 330 39.4
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.0e-37 160.6 152 51.3
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.3e-33 147.1 125 57.6
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.7e-31 141.0 207 47.3
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 2.3e-28 130.6 132 47.0
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 6.6e-28 129.0 210 39.5
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 2.5e-27 127.1 146 50.0
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.7e-26 122.9 130 46.9
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-24 118.2 135 51.1
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 9.9e-24 115.2 100 58.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 4.1e-22 109.8 176 44.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.0e-20 105.1 219 33.3
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.0e-20 103.6 144 44.4
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.5e-16 91.3 105 45.7
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 6.0e-13 79.3 93 45.2
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.3e-10 71.6 52 63.5
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.8e-09 67.8 155 34.8
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.4e-09 67.4 61 60.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 2.4e-09 67.4 246 28.5
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 9.0e-09 65.5 55 60.0


User provided reference genes

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