Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.2e-135 486.5 239 100.0
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 6.9e-128 460.7 239 92.9
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 5.5e-125 451.1 237 91.6
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 3.6e-124 448.4 236 92.8
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.0e-123 446.8 237 90.3
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 7.7e-119 430.6 237 88.2
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 4.6e-116 421.4 237 86.1
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 3.9e-115 418.3 208 99.5
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 8.8e-115 417.2 237 85.7
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.1e-114 416.8 237 85.7
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.1e-114 416.8 237 85.7
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 2.6e-114 415.6 237 84.8
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 4.4e-114 414.8 208 99.0
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.2e-113 412.5 208 97.6
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 3.7e-113 411.8 208 97.6
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 3.4e-111 405.2 238 82.8
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 7.9e-108 394.0 207 89.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 5.7e-106 387.9 207 89.9
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 3.8e-102 375.2 235 77.9
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 7.0e-96 354.4 235 71.9
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 9.1e-96 354.0 238 69.3
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 5.9e-95 351.3 235 71.5
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.0e-94 350.5 234 69.2
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 5.0e-94 348.2 234 68.8
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 3.2e-93 345.5 237 69.6
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 4.2e-93 345.1 238 68.1
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.2e-92 343.6 234 68.8
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 3.6e-92 342.0 243 67.9
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 8.0e-92 340.9 244 66.8
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 8.0e-92 340.9 243 68.3
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.0e-91 340.5 243 67.9
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 4.0e-91 338.6 238 68.1
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 5.2e-91 338.2 243 66.7
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 5.2e-91 338.2 243 66.3
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 6.8e-91 337.8 244 67.6
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.6e-90 335.9 237 66.7
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 4.4e-90 335.1 243 66.7
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 7.5e-90 334.3 237 65.8
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 9.8e-90 334.0 244 66.0
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.3e-89 333.6 242 67.4
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.2e-89 332.8 247 64.8
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 2.8e-89 332.4 246 64.6
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.7e-89 332.0 237 65.8
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 3.7e-89 332.0 247 64.8
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 3.7e-89 332.0 243 64.6
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 4.8e-89 331.6 238 66.4
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 8.3e-89 330.9 243 64.2
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 8.3e-89 330.9 245 63.7
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 8.3e-89 330.9 237 66.2
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.1e-88 330.5 238 66.8
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.8e-88 329.7 245 62.9
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.8e-88 329.7 236 67.4
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 3.1e-88 328.9 245 65.7
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 4.1e-88 328.6 237 65.4
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.4e-88 328.2 245 64.1
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 5.4e-88 328.2 244 64.8
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 7.0e-88 327.8 243 64.6
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 7.0e-88 327.8 242 65.7
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.2e-87 327.0 243 64.6
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.6e-87 326.6 243 62.6
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.0e-87 326.2 243 63.4
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 2.0e-87 326.2 237 64.1
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.7e-87 325.9 237 65.0
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 3.5e-87 325.5 243 64.2
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 4.5e-87 325.1 238 67.2
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 7.7e-87 324.3 242 64.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 7.7e-87 324.3 243 63.4
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.0e-86 323.9 243 64.6
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.0e-86 323.9 244 63.1
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.0e-86 323.9 243 64.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.3e-86 323.6 244 63.9
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.7e-86 323.2 235 66.0
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.7e-86 323.2 235 67.2
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 6.5e-86 321.2 243 64.2
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 8.6e-86 320.9 244 63.9
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 1.1e-85 320.5 213 70.9
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 4.2e-85 318.5 235 66.4
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 5.5e-85 318.2 242 64.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 7.2e-85 317.8 280 57.5
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.2e-84 317.0 241 61.8
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.8e-84 315.8 241 62.7
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 2.3e-83 312.8 243 63.8
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.0e-83 312.0 237 60.3
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 6.8e-83 311.2 225 65.3
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 6.8e-83 311.2 167 88.6
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 9.8e-82 307.4 242 64.5
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 2.8e-81 305.8 244 61.5
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.0e-79 299.7 235 62.6
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 7.8e-79 297.7 269 56.9
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 2.5e-77 292.7 199 68.8
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 5.6e-77 291.6 199 68.3
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 1.2e-76 290.4 243 59.7
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 6.1e-76 288.1 200 67.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.4e-74 282.3 216 63.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.3e-73 280.4 192 68.2
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 2.2e-73 279.6 196 65.8
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.9e-73 279.3 238 57.1
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 6.4e-73 278.1 264 53.4
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 6.4e-73 278.1 243 58.8
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 6.4e-73 278.1 179 71.5
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-72 277.3 239 54.8
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.4e-72 276.9 239 53.6
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 3.2e-72 275.8 218 66.5
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.2e-71 273.9 203 66.5
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.0e-71 273.1 233 58.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.7e-70 270.0 239 55.2
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 1.7e-70 270.0 255 53.3
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.6e-70 267.7 239 53.1
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 2.8e-68 262.7 185 67.0
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.7e-68 261.9 240 51.7
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 3.1e-67 259.2 196 62.2
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.7e-65 253.4 228 61.4
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 3.2e-64 249.2 189 63.5
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 3.2e-64 249.2 194 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.6e-62 241.5 233 51.9
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 4.3e-61 238.8 164 67.7
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.2e-60 237.3 237 52.7
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 4.7e-60 235.3 230 56.1
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 5.2e-59 231.9 242 53.3
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-58 229.6 221 51.6
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.1e-56 221.5 212 55.7
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 7.1e-56 221.5 219 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.6e-55 220.3 218 51.8
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.1e-53 214.2 172 62.2
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.3e-53 212.6 241 51.5
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.5e-53 211.1 193 56.0
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 1.1e-51 207.6 142 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.4e-50 202.2 196 52.0
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 9.2e-48 194.5 129 71.3
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.6e-47 193.7 196 52.6
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 4.6e-47 192.2 172 56.4
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.9e-46 189.1 166 55.4
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.2e-44 184.1 189 50.8
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 4.2e-40 169.1 107 72.9
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 9.3e-40 167.9 219 41.1
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.6e-36 156.0 104 67.3
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.7e-33 147.1 106 61.3
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.7e-33 147.1 103 68.9
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 4.2e-32 142.5 106 65.1
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 4.2e-32 142.5 100 67.0
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.2e-25 120.2 225 36.4
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.0e-23 112.1 156 42.3
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.9e-21 107.1 161 37.3
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 7.4e-21 105.1 97 51.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.5e-16 89.0 69 60.9
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.3e-13 79.3 55 60.0
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.7e-13 79.0 72 54.2
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 9.7e-13 78.2 111 36.9
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-12 76.3 82 45.1
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 6.9e-11 72.0 65 58.5
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.1e-08 64.7 46 60.9
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.9e-08 63.9 82 37.8


User provided reference genes

Program Settings