Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 9.0e-116 420.2 207 100.0
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 9.0e-116 420.2 207 100.0
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 9.0e-116 420.2 207 100.0
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 3.4e-115 418.3 207 99.5
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.7e-114 416.0 207 99.0
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.4e-113 411.0 207 97.6
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.7e-112 408.7 207 96.6
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.0e-111 406.8 207 96.1
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.8e-111 406.0 207 96.6
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.8e-111 406.0 207 96.6
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.8e-111 406.0 207 95.7
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.0e-111 405.2 206 95.6
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.6e-109 399.4 207 94.7
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.6e-109 399.4 207 94.2
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 8.1e-109 397.1 207 93.7
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.1e-108 396.7 206 93.7
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 4.5e-107 391.3 206 93.2
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 3.8e-106 388.3 207 91.3
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 8.4e-106 387.1 206 91.3
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 8.4e-106 387.1 206 91.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.9e-105 386.0 203 92.1
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.0e-104 380.9 217 85.7
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.0e-99 365.9 207 86.0
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.7e-88 328.9 203 77.3
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-87 326.2 206 76.2
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.5e-86 323.2 203 75.9
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.9e-86 322.8 202 76.7
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 4.3e-86 321.6 202 75.7
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 9.7e-86 320.5 197 76.1
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 9.7e-86 320.5 202 75.2
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.3e-85 320.1 202 75.2
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 4.8e-85 318.2 202 76.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 5.9e-83 311.2 203 72.4
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.0e-82 310.5 193 76.7
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.8e-82 308.5 203 73.9
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 2.5e-81 305.8 203 72.9
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 2.5e-81 305.8 205 72.2
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 4.2e-81 305.1 203 72.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 5.5e-81 304.7 203 71.9
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.5e-81 304.7 206 74.8
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 5.5e-81 304.7 201 71.1
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 7.2e-81 304.3 207 70.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 9.4e-81 303.9 203 71.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 9.4e-81 303.9 203 71.4
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.2e-80 303.5 207 72.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.2e-80 303.5 206 74.8
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.6e-80 303.1 203 71.4
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 2.1e-80 302.8 203 70.9
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.7e-80 302.4 203 70.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 3.6e-80 302.0 207 70.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 3.6e-80 302.0 203 72.9
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.7e-80 301.6 203 69.5
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 7.9e-80 300.8 202 70.3
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.4e-79 300.1 205 70.2
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.4e-79 300.1 205 70.2
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.4e-79 300.1 207 70.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.4e-79 300.1 207 71.5
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 70.4
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.0e-79 298.9 224 65.6
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 71.4
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 71.4
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 3.9e-79 298.5 204 70.1
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 5.1e-79 298.1 203 70.9
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 6.7e-79 297.7 203 72.9
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.8e-79 297.4 200 70.5
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 2.0e-78 296.2 204 69.1
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.0e-78 296.2 202 69.8
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 2.0e-78 296.2 207 69.1
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.3e-78 295.4 207 71.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 4.4e-78 295.0 205 68.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.7e-78 294.7 203 70.4
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 5.7e-78 294.7 202 69.8
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 2.2e-77 292.7 203 70.4
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 3.7e-77 292.0 207 68.1
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.7e-77 292.0 204 71.6
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 3.7e-77 292.0 207 69.1
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 3.7e-77 292.0 205 70.7
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.7e-77 292.0 207 70.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 3.7e-77 292.0 207 69.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 68.0
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.1e-76 288.5 203 70.0
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 9.1e-76 287.3 201 69.2
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 9.1e-76 287.3 202 68.3
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.2e-75 287.0 204 69.1
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.5e-75 286.6 203 70.0
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 2.0e-75 286.2 260 59.2
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.0e-75 286.2 204 68.6
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.0e-75 286.2 203 69.5
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.6e-75 285.8 207 67.6
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 4.5e-75 285.0 204 68.6
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 7.7e-75 284.3 204 69.1
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.2e-74 282.7 204 66.2
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 2.2e-74 282.7 199 69.3
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 2.9e-74 282.3 204 70.1
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.9e-74 282.3 203 64.5
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.4e-73 280.0 204 65.7
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.2e-73 278.9 205 68.8
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 3.2e-73 278.9 203 70.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 5.5e-73 278.1 203 66.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 9.4e-73 277.3 193 67.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.7e-72 275.8 206 66.5
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 3.6e-72 275.4 203 68.0
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 4.7e-72 275.0 206 67.0
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 6.1e-72 274.6 203 66.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 6.1e-72 274.6 208 66.3
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 3.0e-71 272.3 205 67.8
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.6e-70 269.2 203 66.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.3e-70 268.9 208 62.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 4.4e-70 268.5 203 65.5
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.7e-70 267.3 203 63.5
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.7e-69 266.5 210 64.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.1e-68 263.8 205 60.5
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.4e-68 262.7 204 62.7
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.1e-68 262.3 203 65.0
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 2.5e-65 252.7 199 58.3
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.8e-63 246.5 204 56.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.3e-63 246.1 194 61.9
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.3e-63 246.1 206 60.7
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.8e-60 236.5 149 76.5
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 2.7e-59 232.6 208 53.8
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 4.0e-55 218.8 212 52.4
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 2.0e-54 216.5 212 52.4
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.3e-53 213.8 203 53.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.4e-52 210.3 203 54.7
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.4e-52 209.5 138 73.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 9.1e-52 207.6 145 69.7
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.0e-50 204.1 140 73.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.3e-47 193.0 140 70.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-46 190.7 152 65.8
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.7e-42 176.8 128 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 3.8e-42 175.6 207 45.9
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 9.5e-41 171.0 135 60.7
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.0e-36 154.8 184 48.9
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 1.4e-28 130.6 199 41.2
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 4.1e-28 129.0 195 36.9
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.5e-25 120.6 99 59.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.3e-25 119.4 132 47.0
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 3.4e-22 109.4 203 36.9
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.3e-21 107.5 52 94.2
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 6.4e-21 105.1 77 61.0
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 3.2e-20 102.8 69 72.5
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.0e-19 98.6 137 43.1
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.0e-18 96.3 66 68.2
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.1e-18 95.5 66 63.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.3e-17 91.7 67 64.2
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 1.2e-11 74.3 42 78.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.0e-10 71.2 70 60.0
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.5e-09 67.4 118 35.6
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.6e-09 64.7 48 58.3
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.6e-09 64.7 48 58.3
A10p15670 Brassica napus HOM05D000083 ORTHO05D000196 3.6e-08 62.8 38 86.8
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.0e-07 58.2 42 61.9
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 7.6e-06 55.1 42 52.4


User provided reference genes

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