Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 4.0e-47 191.0 94 100.0
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 9.3e-44 179.9 93 94.6
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 9.3e-44 179.9 93 94.6
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 9.3e-44 179.9 93 94.6
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 2.1e-43 178.7 91 96.7
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 4.3e-41 171.0 93 91.4
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.6e-40 169.1 92 91.3
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 3.1e-39 164.9 93 88.2
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 6.9e-39 163.7 93 88.2
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 2.6e-38 161.8 93 88.2
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 4.9e-37 157.5 95 83.2
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 2.1e-35 152.1 92 85.9
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 2.3e-34 148.7 94 83.0
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 3.3e-33 144.8 93 82.8
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 9.9e-30 133.3 68 98.5
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 1.4e-28 129.4 68 95.6
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 2.7e-27 125.2 89 70.8
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 3.5e-27 124.8 89 71.9
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 4.6e-27 124.4 99 67.7
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 6.0e-27 124.0 89 71.9
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 7.9e-27 123.6 88 70.5
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 7.9e-27 123.6 88 70.5
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.0e-26 123.2 89 71.9
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.3e-26 122.1 88 69.3
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.3e-26 122.1 88 69.3
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.3e-26 122.1 89 70.8
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 2.3e-26 122.1 89 70.8
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 3.9e-26 121.3 93 64.5
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 6.7e-26 120.6 97 68.0
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 8.7e-26 120.2 89 69.7
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 8.7e-26 120.2 90 67.8
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.5e-25 119.4 91 68.1
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.9e-25 119.0 89 71.9
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 2.5e-25 118.6 97 66.0
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 4.3e-25 117.9 91 69.2
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 4.3e-25 117.9 88 64.8
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 4.3e-25 117.9 89 67.4
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 5.6e-25 117.5 89 69.7
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 5.6e-25 117.5 89 67.4
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 7.4e-25 117.1 91 63.7
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 7.4e-25 117.1 91 63.7
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 7.4e-25 117.1 90 67.8
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 7.4e-25 117.1 89 68.5
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 9.6e-25 116.7 88 67.0
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 9.6e-25 116.7 90 70.0
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.3e-24 116.3 90 70.0
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 1.3e-24 116.3 88 63.6
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 1.3e-24 116.3 92 66.3
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.6e-24 115.9 88 67.0
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.6e-24 115.9 89 67.4
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.6e-24 115.9 88 63.6
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.6e-24 115.9 90 68.9
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.6e-24 115.9 89 66.3
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 1.6e-24 115.9 90 66.7
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 2.1e-24 115.5 88 67.0
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 2.1e-24 115.5 89 70.8
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 2.8e-24 115.2 89 68.5
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 4.8e-24 114.4 89 68.5
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 6.2e-24 114.0 89 66.3
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 6.2e-24 114.0 90 67.8
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 6.2e-24 114.0 91 65.9
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 6.2e-24 114.0 88 68.2
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 8.2e-24 113.6 96 62.5
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 8.2e-24 113.6 88 64.8
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.1e-23 113.2 88 68.2
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 1.1e-23 113.2 90 67.8
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.1e-23 113.2 90 66.7
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.4e-23 112.8 90 66.7
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 1.8e-23 112.5 88 62.5
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.8e-23 112.5 89 67.4
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.8e-23 112.5 90 65.6
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.8e-23 112.5 87 66.7
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 1.8e-23 112.5 89 66.3
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.8e-23 112.5 87 67.8
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.8e-23 112.5 91 67.0
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.1e-23 111.7 91 63.7
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.1e-23 111.7 91 63.7
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 3.1e-23 111.7 89 68.5
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 4.0e-23 111.3 92 64.1
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 6.9e-23 110.5 89 64.0
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 6.9e-23 110.5 89 61.8
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 6.9e-23 110.5 92 60.9
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 9.0e-23 110.2 94 66.0
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 9.0e-23 110.2 88 64.8
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 1.5e-22 109.4 90 65.6
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 2.0e-22 109.0 85 60.0
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 4.5e-22 107.8 91 63.7
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 4.5e-22 107.8 90 65.6
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 5.8e-22 107.5 87 63.2
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 5.8e-22 107.5 91 60.4
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 5.8e-22 107.5 89 64.0
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 7.6e-22 107.1 88 64.8
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 7.6e-22 107.1 96 60.4
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 2.2e-21 105.5 92 64.1
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 3.8e-21 104.8 94 61.7
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 3.8e-21 104.8 85 58.8
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 8.4e-21 103.6 89 60.7
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.1e-20 103.2 89 60.7
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.1e-20 103.2 94 63.8
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.4e-20 102.8 88 58.0
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 1.4e-20 102.8 92 55.4
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.5e-20 102.1 88 56.8
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 4.2e-20 101.3 86 60.5
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 5.5e-20 100.9 93 59.1
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 7.1e-20 100.5 90 60.0
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 7.1e-20 100.5 90 61.1
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 9.3e-20 100.1 88 59.1
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 9.3e-20 100.1 88 60.2
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.6e-19 99.4 91 60.4
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.6e-19 99.4 86 60.5
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.1e-19 99.0 88 58.0
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 2.1e-19 99.0 90 58.9
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 2.1e-19 99.0 73 64.4
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 2.1e-19 99.0 87 63.2
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 2.1e-19 99.0 93 59.1
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.7e-19 98.6 91 59.3
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.7e-19 98.6 88 60.2
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.3e-18 95.5 91 58.2
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 8.7e-18 93.6 86 57.0
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.1e-15 86.7 51 84.3
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.4e-15 85.5 87 49.4
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 9.0e-15 83.6 87 50.6
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 1.5e-14 82.8 87 49.4
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 4.5e-14 81.3 95 49.5
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 1.0e-10 70.1 61 59.0
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 2.5e-09 65.5 82 53.7
C09p49940 Brassica napus HOM05D002024 ORTHO05D007288 8.2e-08 60.5 30 90.0
BolC9t57846H Brassica oleracea HOM05D005924 ORTHO05D007290 8.2e-08 60.5 30 90.0
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 3.1e-07 58.5 75 46.7
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 6.9e-07 57.4 65 50.8
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 7.7e-06 53.9 54 44.4


User provided reference genes

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