Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 2.3e-85 318.9 168 100.0
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.9e-72 275.4 177 83.1
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.4e-71 273.1 174 86.2
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 3.5e-70 268.5 180 81.7
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 3.9e-69 265.0 180 80.6
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 7.6e-65 250.8 181 78.5
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 1.6e-62 243.0 230 65.7
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-60 236.5 224 64.7
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.6e-54 216.5 200 67.5
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 4.6e-54 214.9 199 63.8
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.0e-53 213.8 179 70.4
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.0e-53 212.2 184 67.4
C09p11640 Brassica napus HOM05D003379 ORTHO05D003862 9.7e-52 207.2 186 65.1
BolC9t57591H Brassica oleracea HOM05D013459 ORTHO05D018689 1.2e-46 190.3 175 64.0
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.6e-44 182.6 180 62.8
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.1e-42 177.2 182 57.7
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 7.7e-41 171.0 122 80.3
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.1e-39 167.2 185 57.8
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 1.9e-39 166.4 119 79.8
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.6e-38 163.3 181 60.2
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 5.2e-37 158.3 178 59.0
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 5.7e-36 154.8 187 50.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 3.7e-35 152.1 196 50.0
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 8.8e-29 131.0 68 98.5
BolC1t05110H Brassica oleracea HOM05D003379 ORTHO05D003862 4.2e-23 112.1 58 98.3
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 4.2e-23 112.1 189 40.7
C09p60140 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-22 110.5 69 85.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.8e-21 106.7 192 40.6
BolC2t08454H Brassica oleracea HOM05D003379 ORTHO05D003862 6.8e-21 104.8 58 91.4
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 6.8e-21 104.8 177 40.7
C01p51670 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-20 104.0 53 98.1
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.5e-20 103.6 183 39.3
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 9.8e-20 100.9 189 39.2
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.7e-19 100.1 192 37.0
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.2e-19 99.8 187 38.5
C08p31050 Brassica napus HOM05D003379 ORTHO05D003862 2.8e-19 99.4 53 92.5
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.3e-19 98.2 193 38.3
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 8.3e-19 97.8 192 39.1
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.1e-18 97.4 196 36.7
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.4e-18 96.3 186 39.8
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.2e-17 94.0 195 36.4
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.2e-17 94.0 193 37.8
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.6e-17 93.6 193 36.8
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.6e-17 93.6 206 37.9
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 2.0e-17 93.2 176 38.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.7e-17 92.8 193 36.8
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.7e-17 92.8 171 36.8
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 2.3e-16 89.7 175 38.3
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.9e-16 89.4 167 38.9
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 3.8e-16 89.0 175 38.9
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 6.6e-16 88.2 199 34.2
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.6e-16 87.8 192 37.0
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.5e-15 86.3 196 36.2
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.3e-15 85.9 179 38.5
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.3e-15 85.9 192 34.9
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.3e-15 85.5 183 36.1
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.3e-15 85.5 175 37.1
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 7.3e-15 84.7 197 35.5
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 9.5e-15 84.3 202 35.1
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 9.5e-15 84.3 198 33.3
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.2e-14 84.0 171 38.6
BolC9t53871H Brassica oleracea HOM05D003379 ORTHO05D003862 1.6e-14 83.6 43 97.7
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.1e-14 83.2 190 35.8
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.8e-14 82.8 197 35.5
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 1.0e-13 80.9 205 34.1
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.4e-13 80.5 187 34.2
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.0e-13 79.3 153 36.6
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 5.2e-13 78.6 184 35.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 6.8e-13 78.2 89 49.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 6.8e-13 78.2 89 49.4
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 6.8e-13 78.2 189 32.3
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 6.8e-13 78.2 202 33.2
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.8e-13 78.2 199 34.7
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.9e-13 77.8 185 38.4
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.9e-13 77.8 185 35.7
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.0e-12 76.6 184 34.8
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 7.5e-12 74.7 177 35.0
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 9.8e-12 74.3 212 34.0
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.3e-11 73.9 208 33.7
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.3e-11 73.9 188 34.0
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.3e-11 73.9 206 34.0
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 2.2e-11 73.2 94 52.1
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 3.7e-11 72.4 207 33.3
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.9e-11 72.0 183 33.3
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 4.9e-11 72.0 106 45.3
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 4.9e-11 72.0 89 49.4
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 6.4e-11 71.6 211 30.3
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 6.4e-11 71.6 202 34.7
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 8.3e-11 71.2 200 30.0
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.4e-10 70.5 88 45.5
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.4e-10 70.5 206 35.4
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.4e-10 70.5 178 36.5
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.8e-10 70.1 94 47.9
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.8e-10 70.1 89 49.4
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.8e-10 70.1 200 34.5
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.4e-10 69.7 96 46.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.2e-10 69.3 187 33.2
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.2e-10 69.3 193 32.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.1e-10 68.9 196 31.1
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.1e-10 68.9 186 31.2
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.1e-10 68.9 89 47.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.1e-10 68.9 89 47.2
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 4.1e-10 68.9 202 31.2
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 4.1e-10 68.9 212 30.7
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 5.4e-10 68.6 178 34.3
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 5.4e-10 68.6 98 44.9
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 5.4e-10 68.6 88 46.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 7.0e-10 68.2 180 32.2
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 7.0e-10 68.2 184 34.2
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 7.0e-10 68.2 79 49.4
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 7.0e-10 68.2 198 33.3
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 7.0e-10 68.2 94 44.7
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.2e-09 67.4 90 46.7
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.6e-09 67.0 177 35.6
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-09 67.0 173 36.4
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.0e-09 66.6 184 31.5
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 2.0e-09 66.6 199 31.2
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.0e-09 66.6 94 43.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.0e-09 66.6 196 32.7
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 2.7e-09 66.2 89 44.9
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.7e-09 66.2 179 32.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 2.7e-09 66.2 183 34.4
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.5e-09 65.9 94 47.9
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.5e-09 65.9 94 47.9
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.6e-09 65.5 94 46.8
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.6e-09 65.5 183 34.4
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 5.9e-09 65.1 85 48.2
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 5.9e-09 65.1 175 35.4
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 5.9e-09 65.1 84 45.2
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 7.8e-09 64.7 204 31.4
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 7.8e-09 64.7 95 42.1
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.0e-08 64.3 180 32.8
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 1.0e-08 64.3 173 34.7
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.3e-08 63.9 87 47.1
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.7e-08 63.5 179 34.6
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.3e-08 63.2 199 32.7
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 2.3e-08 63.2 172 34.9
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 2.3e-08 63.2 90 46.7
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.9e-08 62.4 179 33.5
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 3.9e-08 62.4 170 32.4
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 3.9e-08 62.4 181 34.3
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 5.0e-08 62.0 197 29.4
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.0e-08 62.0 172 34.9
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 6.6e-08 61.6 174 29.9
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.6e-08 61.2 173 35.8
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.1e-07 60.8 174 32.8
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.1e-07 60.8 82 48.8
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.5e-07 60.5 174 32.8
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.9e-07 60.1 195 31.8
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.9e-07 60.1 107 39.3
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 3.3e-07 59.3 197 32.5
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.3e-07 59.3 76 47.4
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 4.3e-07 58.9 200 30.0
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 5.6e-07 58.5 173 32.9
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 5.6e-07 58.5 193 31.1
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 9.5e-07 57.8 91 45.1
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.2e-06 57.4 198 28.3
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.2e-06 57.4 189 29.1
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 2.1e-06 56.6 202 29.7
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.7e-06 55.5 188 30.9


User provided reference genes

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