Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1766.1 947 100.0
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1743.8 958 98.3
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1707.6 957 95.7
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1479.5 977 85.0
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 0.0e+00 1477.6 977 84.9
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.3e-298 1028.5 1035 61.3
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 2.6e-295 1018.8 1027 59.8
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.9e-294 1014.6 1039 63.2
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 6.9e-280 967.6 1034 59.5
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.2e-278 962.6 1031 58.8
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 3.0e-275 952.2 1040 60.6
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 9.1e-264 914.1 987 60.7
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 2.5e-261 906.0 994 60.1
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.4e-259 900.2 1036 58.5
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.1e-258 897.1 993 58.8
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.4e-255 885.6 867 64.0
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 2.7e-252 875.9 1016 59.2
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 2.7e-252 875.9 1016 59.2
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 2.3e-251 872.8 1055 56.6
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 7.7e-247 857.8 981 60.6
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 7.5e-226 788.1 1028 55.1
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 9.8e-226 787.7 1024 55.8
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.2e-216 756.1 1005 53.0
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 5.2e-195 685.6 851 57.1
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.2e-183 647.9 1080 45.2
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.6e-130 471.5 1065 39.8
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 5.5e-112 409.8 979 38.6
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.2e-109 402.1 980 39.4
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.2e-108 397.9 941 38.8
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 4.9e-108 396.7 959 39.1
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 2.8e-103 380.9 983 38.1
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.4e-102 378.6 980 37.8
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.6e-98 365.2 932 37.7
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-98 365.2 927 36.1
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.3e-97 361.3 892 36.5
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 3.3e-96 357.5 891 36.4
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 4.0e-94 350.5 924 37.7
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 4.1e-91 340.5 936 35.3
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-89 335.5 932 35.1
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 6.6e-89 333.2 933 35.0
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 3.3e-88 330.9 928 35.1
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 9.9e-85 319.3 926 34.3
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.6e-82 312.0 914 35.0
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 6.2e-63 246.9 732 33.7
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.0e-57 229.6 1157 27.7
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 3.9e-57 227.6 1089 28.4
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 3.7e-55 221.1 1180 26.9
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 4.8e-55 220.7 1159 28.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 8.1e-55 219.9 1149 27.2
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 8.1e-55 219.9 1159 27.7
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.0e-54 217.6 1103 27.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 5.3e-54 217.2 1089 27.1
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 9.0e-54 216.5 1129 27.1
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 2.0e-53 215.3 1149 27.7
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.4e-53 214.5 1051 27.7
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.4e-53 214.5 1051 27.7
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.7e-52 212.2 1183 27.7
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.2e-52 211.8 1168 26.6
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 3.8e-52 211.1 1156 27.1
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 4.9e-52 210.7 1157 27.7
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.4e-52 209.9 1047 28.3
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.4e-52 209.9 1184 27.4
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.4e-51 209.1 1182 28.3
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.2e-51 208.0 1156 27.5
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 5.5e-51 207.2 1154 26.9
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 7.9e-50 203.4 1058 27.3
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.3e-49 201.8 1191 25.9
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.7e-49 199.9 1063 26.6
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.3e-48 198.0 1004 27.8
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 4.3e-48 197.6 1180 26.1
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 8.2e-47 193.4 1198 27.1
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 8.2e-47 193.4 983 27.0
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-46 193.0 660 31.7
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 4.0e-46 191.0 1166 26.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 5.3e-46 190.7 1199 26.0
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 6.9e-46 190.3 1192 26.6
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.2e-45 189.5 658 31.8
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.0e-45 188.7 1183 25.4
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.8e-44 184.5 1171 25.6
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.4e-43 182.6 1172 25.5
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.4e-43 182.6 1177 25.4
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 2.5e-43 181.8 1131 25.9
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 4.2e-43 181.0 1171 26.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.2e-42 179.5 1171 25.5
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.1e-42 178.7 1180 26.1
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 2.7e-42 178.3 1173 26.0
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 4.6e-42 177.6 1186 26.1
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 4.6e-42 177.6 1059 25.6
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 6.1e-42 177.2 984 27.5
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 7.9e-42 176.8 1140 27.2
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.0e-41 174.9 1131 26.5
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 3.9e-41 174.5 1033 27.0
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.9e-41 174.5 1184 25.7
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 1.1e-40 172.9 1184 25.7
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 1.9e-40 172.2 1162 24.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.9e-40 172.2 1183 25.1
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.5e-40 171.8 1132 25.6
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 5.7e-40 170.6 1160 26.1
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 9.7e-40 169.9 1161 26.0
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.3e-39 169.5 1162 26.2
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 3.7e-39 167.9 1165 26.4
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 1.4e-38 166.0 1153 26.0
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 5.3e-38 164.1 687 31.9
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 9.0e-38 163.3 1131 26.6
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.6e-37 161.8 889 26.7
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.7e-36 159.1 1034 26.6
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 2.2e-36 158.7 1049 25.5
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 6.5e-36 157.1 1174 24.6
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.5e-36 156.8 1191 25.7
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 5.5e-35 154.1 1127 25.6
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 9.4e-35 153.3 1126 24.4
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 3.9e-33 147.9 1213 25.0
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.1e-33 147.5 330 34.5
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.5e-32 145.2 423 32.9
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 5.7e-32 144.1 904 27.4
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 7.4e-32 143.7 420 32.1
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.3e-31 142.9 420 32.6
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.1e-30 139.8 1128 24.5
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 9.1e-30 136.7 962 25.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 9.1e-30 136.7 954 26.0
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 2.0e-29 135.6 372 33.1
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.6e-29 135.2 432 30.6
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 2.6e-29 135.2 1197 24.1
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 3.4e-29 134.8 944 26.0
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.0e-28 133.3 457 30.0
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.0e-28 133.3 1088 25.3
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.0e-28 133.3 443 29.3
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 1.7e-28 132.5 710 25.5
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 2.9e-28 131.7 406 30.8
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 3.8e-28 131.3 340 32.1
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 5.0e-28 131.0 412 30.8
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.9e-27 129.0 365 33.7
BcaC03g14237 Brassica carinata HOM05D003788 ORTHO05D004633 7.2e-27 127.1 148 54.1
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 9.4e-27 126.7 1116 23.2
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.6e-26 125.9 451 30.6
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.1e-26 125.6 352 32.1
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 6.1e-26 124.0 775 25.3
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.9e-26 123.6 287 35.9
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 7.9e-26 123.6 438 29.0
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.3e-25 122.1 596 28.2
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 3.0e-25 121.7 411 31.4
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.5e-24 119.4 322 32.3
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 2.6e-24 118.6 686 27.0
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 3.3e-24 118.2 405 30.4
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.7e-24 117.5 381 31.2
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 5.7e-24 117.5 438 29.5
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.4e-24 117.1 294 33.0
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 9.7e-24 116.7 1100 23.5
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.3e-23 116.3 1061 23.8
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.8e-23 115.2 456 29.8
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.8e-23 115.2 379 29.8
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.4e-22 112.8 306 33.7
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 3.1e-22 111.7 1132 23.4
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 7.0e-22 110.5 993 25.0
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.2e-21 109.8 180 43.3
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 3.5e-21 108.2 285 33.0
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.5e-21 107.8 985 24.3
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 5.9e-21 107.5 1153 24.8
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.0e-20 106.7 916 24.5
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.7e-20 105.9 200 40.5
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 2.9e-20 105.1 1083 23.7
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 9.4e-19 100.1 691 26.2
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.0e-17 95.1 1014 23.1
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.8e-15 87.8 374 28.6
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 3.0e-09 68.6 262 27.5
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 6.8e-09 67.4 258 27.9
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 2.0e-08 65.9 234 30.3
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.7e-08 64.3 95 40.0
BcaC03g16336 Brassica carinata HOM05D021359 ORTHO05D016065 1.7e-07 62.8 119 39.5
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.7e-07 61.6 160 35.0
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.4e-06 58.9 289 24.6
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 5.4e-06 57.8 248 27.8


User provided reference genes

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