Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20116 Brassica carinata HOM05D000088 ORTHO05D002723 3.3e-46 188.0 92 100.0
AL1G25840 Arabidopsis lyrata HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
AT1G14000 Arabidopsis thaliana HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
BcaC05g25296 Brassica carinata HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
A06p10000 Brassica napus HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
C05p11760 Brassica napus HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
BolC5t29922H Brassica oleracea HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
BraA06t24186Z Brassica rapa HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
CARHR014370 Cardamine hirsuta HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
Thhalv10007646m.g Eutrema salsugineum HOM05D000088 ORTHO05D002723 7.2e-41 170.2 84 94.0
Carub.0001s1369 Capsella rubella HOM05D000088 ORTHO05D002723 1.6e-40 169.1 84 92.9
THA.LOC104801810 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 1.6e-40 169.1 84 92.9
Aa31LG1G1030 Aethionema arabicum HOM05D000088 ORTHO05D002723 2.1e-40 168.7 84 91.7
THA.LOC104805177 Tarenaya hassleriana HOM05D000088 ORTHO05D002723 4.7e-40 167.5 84 92.9
BcaB08g34352 Brassica carinata HOM05D000088 ORTHO05D002723 6.1e-40 167.2 84 92.9
BcaB08g34353 Brassica carinata HOM05D000088 ORTHO05D002723 6.1e-40 167.2 84 92.9
BcaB08g34354 Brassica carinata HOM05D000088 ORTHO05D002723 6.1e-40 167.2 84 92.9
A09p62570 Brassica napus HOM05D000088 ORTHO05D002723 6.1e-40 167.2 84 92.9
C08p46130 Brassica napus HOM05D000088 ORTHO05D002723 6.1e-40 167.2 84 92.9
BolC8t52163H Brassica oleracea HOM05D000088 ORTHO05D002723 6.1e-40 167.2 84 92.9
Sp1g12360 Schrenkiella parvula HOM05D000088 ORTHO05D002723 6.1e-40 167.2 84 92.9
ClCG05G024010 Citrullus lanatus HOM05D000088 ORTHO05D002723 8.8e-39 163.3 84 88.1
MELO3C012125.2 Cucumis melo HOM05D000088 ORTHO05D002723 8.8e-39 163.3 84 88.1
CsaV3_5G033030 Cucumis sativus L. HOM05D000088 ORTHO05D002723 8.8e-39 163.3 84 88.1
Cfa008933 Carpinus fangiana HOM05D000088 ORTHO05D002723 3.3e-38 161.4 84 85.7
SGA_v2.0_scaffold389G50546 Striga asiatica HOM05D000088 ORTHO05D002723 3.3e-38 161.4 84 86.9
Dinv34091 Davidia involucrata HOM05D000088 ORTHO05D002723 5.7e-38 160.6 84 86.9
Sc04g0007890 Simmondsia chinensis HOM05D000088 ORTHO05D002723 5.7e-38 160.6 84 86.9
TAR622G0409 Trochodendron aralioides HOM05D000088 ORTHO05D002723 5.7e-38 160.6 84 86.9
CiPaw.06G088300 Carya illinoinensis HOM05D000088 ORTHO05D002723 7.4e-38 160.2 84 85.7
vmacro01348 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 7.4e-38 160.2 84 86.9
DCAR_007175 Daucus carota HOM05D000088 ORTHO05D002723 1.3e-37 159.5 84 85.7
Atru.chr11.1723 Acer truncatum HOM05D000088 ORTHO05D002723 1.7e-37 159.1 84 85.7
Cpa.g.sc1.62 Carica papaya HOM05D000088 ORTHO05D002723 1.7e-37 159.1 84 84.5
Ciclev10031585m.g Citrus clementina HOM05D000088 ORTHO05D002723 1.7e-37 159.1 84 83.3
Lj6A784T66 Lonicera japonica HOM05D000088 ORTHO05D002723 1.7e-37 159.1 84 86.9
TWI75G0144 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 1.7e-37 159.1 84 84.5
Manes.05G105800 Manihot esculenta HOM05D000088 ORTHO05D002723 2.2e-37 158.7 84 84.5
Sed0006999 Sechium edule HOM05D000088 ORTHO05D002723 2.2e-37 158.7 84 86.9
Hund25210 Selenicereus undatus HOM05D000088 ORTHO05D002723 2.2e-37 158.7 84 84.5
GSVIVG01003214001 Vitis vinifera HOM05D000088 ORTHO05D002723 2.2e-37 158.7 84 85.7
EL10Ac6g13259 Beta vulgaris HOM05D000088 ORTHO05D002723 2.8e-37 158.3 84 85.7
BcaNung01370 Brassica carinata HOM05D000088 ORTHO05D002723 2.8e-37 158.3 79 96.2
CiPaw.05G130000 Carya illinoinensis HOM05D000088 ORTHO05D002723 2.8e-37 158.3 84 83.3
TAR371G1093 Trochodendron aralioides HOM05D000088 ORTHO05D002723 3.7e-37 157.9 84 85.7
Dinv16687 Davidia involucrata HOM05D000088 ORTHO05D002723 4.8e-37 157.5 84 84.5
Hma1.2p1_0354F.1_g133840 Hydrangea macrophylla HOM05D000088 ORTHO05D002723 6.3e-37 157.1 84 84.5
CSS0019856 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 8.2e-37 156.8 84 84.5
Gohir.A12G163500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 8.2e-37 156.8 84 85.7
Gohir.D12G166500 Gossypium hirsutum HOM05D000088 ORTHO05D002723 8.2e-37 156.8 84 85.7
Gorai.008G179300 Gossypium raimondii HOM05D000088 ORTHO05D002723 8.2e-37 156.8 84 85.7
DCAR_030993 Daucus carota HOM05D000088 ORTHO05D002723 1.1e-36 156.4 84 85.7
Sed0015795 Sechium edule HOM05D000088 ORTHO05D002723 1.1e-36 156.4 84 85.7
Thecc.02G340000 Theobroma cacao HOM05D000088 ORTHO05D002723 1.1e-36 156.4 84 84.5
Gohir.A03G102400 Gossypium hirsutum HOM05D000088 ORTHO05D002723 1.4e-36 156.0 84 83.3
Gohir.D02G127300 Gossypium hirsutum HOM05D000088 ORTHO05D002723 1.4e-36 156.0 84 83.3
Gorai.005G142900 Gossypium raimondii HOM05D000088 ORTHO05D002723 1.4e-36 156.0 84 83.3
Nn4g23266 Nelumbo nucifera HOM05D000088 ORTHO05D002723 1.4e-36 156.0 84 84.5
Potri.010G164500 Populus trichocarpa HOM05D000088 ORTHO05D002723 1.4e-36 156.0 84 84.5
Sabra08G0068200 Salix brachista HOM05D000088 ORTHO05D002723 1.4e-36 156.0 84 84.5
Manes.01G033000 Manihot esculenta HOM05D000088 ORTHO05D002723 1.8e-36 155.6 84 82.1
TAR374G0898 Trochodendron aralioides HOM05D000088 ORTHO05D002723 1.8e-36 155.6 84 83.3
MSTRG.13430 Avicennia marina HOM05D000088 ORTHO05D002723 2.4e-36 155.2 84 83.3
Duzib251G0440 Durio zibethinus HOM05D000088 ORTHO05D002723 2.4e-36 155.2 84 84.5
Glyma.01G052600 Glycine max HOM05D000088 ORTHO05D002723 2.4e-36 155.2 84 83.3
Lsat_1_v5_gn_8_48780 Lactuca sativa HOM05D000088 ORTHO05D002723 2.4e-36 155.2 84 83.3
PGR102G1758 Punica granatum HOM05D000088 ORTHO05D002723 2.4e-36 155.2 84 84.5
MSTRG.2333 Avicennia marina HOM05D000088 ORTHO05D002723 3.1e-36 154.8 84 83.3
Migut.E00071 Erythranthe guttata HOM05D000088 ORTHO05D002723 3.1e-36 154.8 84 84.5
Nitab4.5_0000391g0280 Nicotiana tabacum HOM05D000088 ORTHO05D002723 3.1e-36 154.8 84 83.3
Nitab4.5_0004906g0030 Nicotiana tabacum HOM05D000088 ORTHO05D002723 3.1e-36 154.8 84 83.3
Peaxi162Scf00222g00246 Petunia axillaris HOM05D000088 ORTHO05D002723 3.1e-36 154.8 84 83.3
Solyc05g013070.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 3.1e-36 154.8 84 83.3
PGSC0003DMG400028346 Solanum tuberosum HOM05D000088 ORTHO05D002723 3.1e-36 154.8 84 83.3
arahy.Tifrunner.gnm1.ann1.47C61G Arachis hypogaea HOM05D000088 ORTHO05D002723 4.1e-36 154.5 84 81.0
arahy.Tifrunner.gnm1.ann1.EJ8ZFW Arachis hypogaea HOM05D000088 ORTHO05D002723 4.1e-36 154.5 84 81.0
AUR62005837 Chenopodium quinoa HOM05D000088 ORTHO05D002723 4.1e-36 154.5 84 83.3
AUR62032831 Chenopodium quinoa HOM05D000088 ORTHO05D002723 4.1e-36 154.5 84 83.3
COL.COLO4_27980 Corchorus olitorius HOM05D000088 ORTHO05D002723 4.1e-36 154.5 84 83.3
Solyc01g010950.3 Solanum lycopersicum HOM05D000088 ORTHO05D002723 4.1e-36 154.5 84 83.3
Sopen01g006790 Solanum pennellii HOM05D000088 ORTHO05D002723 4.1e-36 154.5 84 83.3
ECA233G4788 Erigeron canadensis HOM05D000088 ORTHO05D002723 5.3e-36 154.1 84 82.1
Lj4g0024034 Lotus japonicus HOM05D000088 ORTHO05D002723 5.3e-36 154.1 84 82.1
Potri.008G090800 Populus trichocarpa HOM05D000088 ORTHO05D002723 5.3e-36 154.1 84 84.5
Prupe.1G279200 Prunus persica HOM05D000088 ORTHO05D002723 5.3e-36 154.1 84 83.3
Rhsim12G0132900 Rhododendron simsii HOM05D000088 ORTHO05D002723 5.3e-36 154.1 84 83.3
vmacro16350 Vaccinium macrocarpon HOM05D000088 ORTHO05D002723 5.3e-36 154.1 84 83.3
HPP92_016904 Vanilla planifolia HOM05D000088 ORTHO05D002723 5.3e-36 154.1 84 82.1
Actinidia12303 Actinidia chinensis HOM05D000088 ORTHO05D002723 7.0e-36 153.7 84 83.3
BolC9t57605H Brassica oleracea HOM05D000088 ORTHO05D002723 7.0e-36 153.7 73 97.3
Cc11_g12640 Coffea canephora HOM05D000088 ORTHO05D002723 7.0e-36 153.7 84 82.1
Migut.L01250 Erythranthe guttata HOM05D000088 ORTHO05D002723 7.0e-36 153.7 84 81.0
Duzib268G1625 Durio zibethinus HOM05D000088 ORTHO05D002723 9.1e-36 153.3 84 82.1
Sopen05g007840 Solanum pennellii HOM05D000088 ORTHO05D002723 9.1e-36 153.3 84 82.1
MD16G1067500 Malus domestica HOM05D000088 ORTHO05D002723 1.6e-35 152.5 84 82.1
C07p35930 Brassica napus HOM05D000088 ORTHO05D002723 2.6e-35 151.8 73 95.9
BolC7t44110H Brassica oleracea HOM05D000088 ORTHO05D002723 2.6e-35 151.8 73 95.9
BraA09t41620Z Brassica rapa HOM05D000088 ORTHO05D002723 2.6e-35 151.8 113 69.0
HanXRQChr08g0210651 Helianthus annuus HOM05D000088 ORTHO05D002723 2.6e-35 151.8 84 82.1
Lj3A1033G51 Lonicera japonica HOM05D000088 ORTHO05D002723 2.6e-35 151.8 84 79.8
Lalb_Chr16g0385661 Lupinus albus HOM05D000088 ORTHO05D002723 2.6e-35 151.8 84 79.8
Lalb_Chr05g0220221 Lupinus albus HOM05D000088 ORTHO05D002723 3.5e-35 151.4 84 79.8
PSO478G1272 Papaver somniferum HOM05D000088 ORTHO05D002723 3.5e-35 151.4 84 78.6
CSS0044737 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 81.0
CSS0046870 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 81.0
Ca_23883_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 78.6
DCAR_027439 Daucus carota HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 79.8
Eucgr.B03199 Eucalyptus grandis HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 82.1
FAN07G1717 Fragaria x ananassa HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 82.1
Lalb_Chr09g0329171 Lupinus albus HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 79.8
SalBow8G2740 Salvia bowleyana HOM05D000088 ORTHO05D002723 4.5e-35 151.0 84 81.0
FvH4_4g30780 Fragaria vesca HOM05D000088 ORTHO05D002723 5.9e-35 150.6 84 82.1
FAN12G3418 Fragaria x ananassa HOM05D000088 ORTHO05D002723 5.9e-35 150.6 84 82.1
RcHm_v2.0_Chr4g0439171 Rosa chinensis HOM05D000088 ORTHO05D002723 5.9e-35 150.6 84 82.1
ATR0564G423 Amborella trichopoda HOM05D000088 ORTHO05D002723 7.7e-35 150.2 83 81.9
Psat7g156080 Pisum sativum HOM05D000088 ORTHO05D002723 7.7e-35 150.2 84 78.6
BcaC03g15297 Brassica carinata HOM05D009754 ORTHO05D002723 1.0e-34 149.8 77 90.9
Glyma.07G228000 Glycine max HOM05D000088 ORTHO05D002723 1.0e-34 149.8 84 78.6
Glyma.20G031300 Glycine max HOM05D000088 ORTHO05D002723 1.0e-34 149.8 84 78.6
C02p29060 Brassica napus HOM05D000088 ORTHO05D002723 1.3e-34 149.4 73 94.5
FAN22G1820 Fragaria x ananassa HOM05D000088 ORTHO05D002723 1.3e-34 149.4 84 82.1
CAN.G964.31 Capsicum annuum HOM05D000088 ORTHO05D002723 1.7e-34 149.1 84 81.0
Duzib248G1678 Durio zibethinus HOM05D000088 ORTHO05D002723 1.7e-34 149.1 84 81.0
Gohir.A13G085100 Gossypium hirsutum HOM05D000088 ORTHO05D002723 1.7e-34 149.1 84 81.0
Gohir.D13G077900 Gossypium hirsutum HOM05D000088 ORTHO05D002723 1.7e-34 149.1 84 81.0
Gorai.013G089100 Gossypium raimondii HOM05D000088 ORTHO05D002723 1.7e-34 149.1 84 81.0
SGA_v2.0_scaffold455G51908 Striga asiatica HOM05D000088 ORTHO05D002723 1.7e-34 149.1 84 77.4
Aqoxy3G03481 Aquilegia oxysepala HOM05D000088 ORTHO05D002723 2.2e-34 148.7 84 78.6
Phvul.002G169100 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 2.2e-34 148.7 84 79.8
CDE07G0214 Ceratophyllum demersum HOM05D000088 ORTHO05D002723 3.8e-34 147.9 84 78.6
VMungo0251G2979 Vigna mungo HOM05D000088 ORTHO05D002723 3.8e-34 147.9 84 78.6
Medtr4g082325 Medicago truncatula HOM05D000088 ORTHO05D002723 6.5e-34 147.1 84 78.6
Sabra10G0124900 Salix brachista HOM05D000088 ORTHO05D002723 6.5e-34 147.1 93 73.1
TPR.G34086 Trifolium pratense HOM05D000088 ORTHO05D002723 1.1e-33 146.4 84 77.4
BcaC04g24216 Brassica carinata HOM05D000088 ORTHO05D002723 1.9e-33 145.6 74 90.5
TWI79G1035 Tripterygium wilfordii HOM05D000088 ORTHO05D002723 1.9e-33 145.6 84 78.6
C09p56740 Brassica napus HOM05D000088 ORTHO05D002723 4.2e-33 144.4 73 90.4
BolC9t58530H Brassica oleracea HOM05D000088 ORTHO05D002723 4.2e-33 144.4 73 90.4
arahy.Tifrunner.gnm1.ann1.0QRZ59 Arachis hypogaea HOM05D000088 ORTHO05D002723 1.2e-32 142.9 84 75.0
Rhsim12G0079000 Rhododendron simsii HOM05D000088 ORTHO05D002723 2.7e-32 141.7 111 64.9
Hund05865 Selenicereus undatus HOM05D000088 ORTHO05D002723 4.7e-32 141.0 71 88.7
Oeu021075.6 Olea europaea HOM05D000088 ORTHO05D002723 6.1e-32 140.6 117 59.8
PSO063G1877 Papaver somniferum HOM05D000088 ORTHO05D002723 1.0e-31 139.8 84 75.0
Phvul.002G091900 Phaseolus vulgaris HOM05D000088 ORTHO05D002723 1.4e-31 139.4 84 76.2
Os07g0632800 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002723 1.8e-31 139.0 84 75.0
ECA246G4818 Erigeron canadensis HOM05D000088 ORTHO05D002723 2.3e-31 138.7 84 72.6
Lj2g0027547 Lotus japonicus HOM05D000088 ORTHO05D002723 3.0e-31 138.3 84 73.8
Zm00001eb328410 Zea mays HOM05D000088 ORTHO05D002723 4.0e-31 137.9 84 73.8
VMungo1215G0771 Vigna mungo HOM05D000088 ORTHO05D002723 8.8e-31 136.7 84 73.8
MD13G1068700 Malus domestica HOM05D000088 ORTHO05D002723 1.5e-30 136.0 84 72.6
Oeu016240.4 Olea europaea HOM05D000088 ORTHO05D002723 1.5e-30 136.0 73 80.8
PSO063G1164 Papaver somniferum HOM05D000088 ORTHO05D002723 1.5e-30 136.0 84 73.8
PSO198G0068 Papaver somniferum HOM05D000088 ORTHO05D002723 1.5e-30 136.0 84 73.8
Lsat_1_v5_gn_3_51840 Lactuca sativa HOM05D000088 ORTHO05D002723 3.3e-30 134.8 84 73.8
HanXRQChr17g0545371 Helianthus annuus HOM05D000088 ORTHO05D002723 5.7e-30 134.0 84 70.2
Ah.03g134730 Amaranthus hybridus HOM05D000088 ORTHO05D002723 1.1e-28 129.8 71 81.7
MBI02_g14226_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D002723 1.8e-28 129.0 133 51.9
arahy.Tifrunner.gnm1.ann1.SA054G Arachis hypogaea HOM05D000088 ORTHO05D002723 4.1e-28 127.9 71 77.5
Haze_11962 Corylus avellana HOM05D000088 ORTHO05D002723 2.9e-26 121.7 109 56.0
BolC1t01806H Brassica oleracea HOM05D059596 ORTHO05D039216 5.2e-23 110.9 83 66.3
Actinidia33222 Actinidia chinensis HOM05D000088 ORTHO05D002723 1.6e-19 99.4 52 82.7
DCAR_027440 Daucus carota HOM05D000088 ORTHO05D002723 5.0e-18 94.4 52 75.0
FAN16G2657 Fragaria x ananassa HOM05D015346 ORTHO05D020740 5.0e-18 94.4 90 56.7
FAN11G3157 Fragaria x ananassa HOM05D015346 ORTHO05D020740 1.1e-17 93.2 89 56.2
Mapoly0031s0049 Marchantia polymorpha HOM05D000088 ORTHO05D002723 1.9e-17 92.4 84 56.0
Pp3c5_19480 Physcomitrium patens HOM05D000088 ORTHO05D002723 5.5e-17 90.9 86 53.5
Pp3c16_8860 Physcomitrium patens HOM05D000088 ORTHO05D002723 2.1e-16 89.0 86 46.5
AagrBONN_evm.TU.Sc2ySwM_344.1476 Anthoceros agrestis HOM05D000088 ORTHO05D002723 2.8e-16 88.6 58 69.0
SMO348G0065 Selaginella moellendorffii HOM05D000088 ORTHO05D002723 1.4e-15 86.3 85 48.2
SEGI_00429 Sequoiadendron giganteum HOM05D000088 ORTHO05D002723 8.3e-13 77.0 52 61.5
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.4e-12 75.5 41 73.2
AagrBONN_evm.TU.Sc2ySwM_362.128 Anthoceros agrestis HOM05D000088 ORTHO05D002723 3.8e-10 68.2 80 48.8
Pp3c16_9370 Physcomitrium patens HOM05D000088 ORTHO05D002723 5.0e-10 67.8 87 46.0
C06p48190 Brassica napus HOM05D000088 ORTHO05D002723 6.6e-10 67.4 42 78.6
FAN26G0476 Fragaria x ananassa HOM05D013168 ORTHO05D020740 1.5e-09 66.2 34 73.5
TAR622G1310 Trochodendron aralioides HOM05D000088 ORTHO05D002723 2.5e-09 65.5 32 87.5
Pp3c6_6480 Physcomitrium patens HOM05D000088 ORTHO05D002723 3.3e-09 65.1 85 43.5
CBR_g32000 Chara braunii HOM05D000239 ORTHO05D002723 4.3e-09 64.7 51 56.9
FAN16G2533 Fragaria x ananassa HOM05D000088 ORTHO05D020740 7.3e-09 63.9 52 57.7
FAN26G3349 Fragaria x ananassa HOM05D000088 ORTHO05D020740 7.3e-09 63.9 52 57.7
Nn3g17321 Nelumbo nucifera HOM05D000088 ORTHO05D002723 2.8e-08 62.0 32 90.6
Pp3c11_21730 Physcomitrium patens HOM05D000088 ORTHO05D002723 2.3e-07 58.9 51 51.0
CBR_g24251 Chara braunii HOM05D000088 ORTHO05D002723 8.9e-07 57.0 82 41.5
SMO172G0076 Selaginella moellendorffii HOM05D000088 ORTHO05D002723 8.9e-07 57.0 83 38.6
SEGI_04335 Sequoiadendron giganteum HOM05D000088 ORTHO05D002723 1.5e-06 56.2 32 81.2
Migut.B01744 Erythranthe guttata HOM05D000088 ORTHO05D002723 3.4e-06 55.1 49 46.9
DCAR_006925 Daucus carota HOM05D000088 ORTHO05D002723 7.5e-06 53.9 81 35.8


User provided reference genes

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