Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.4e-153 546.6 340 100.0
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 3.4e-144 515.4 346 90.2
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.3e-143 513.5 346 89.9
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 2.0e-88 330.1 344 63.4
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 1.9e-83 313.5 315 72.7
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 8.2e-82 308.1 349 63.6
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 2.2e-74 283.5 338 63.6
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 4.1e-73 279.3 355 62.0
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 4.5e-72 275.8 352 61.9
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 7.2e-70 268.5 356 58.7
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 7.2e-70 268.5 356 58.7
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 7.2e-70 268.5 356 58.7
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 5.1e-68 262.3 347 55.3
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 8.2e-66 255.0 357 51.0
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 2.0e-56 223.8 313 59.4
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 5.5e-54 215.7 395 42.3
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 1.0e-52 211.5 306 56.5
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 8.8e-52 208.4 396 45.2
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 1.0e-44 184.9 306 53.6
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 7.7e-40 168.7 412 37.1
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 3.6e-37 159.8 161 57.1
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 8.0e-37 158.7 406 37.4
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.4e-36 157.9 407 37.1
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.8e-36 157.5 350 38.6
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 3.0e-36 156.8 339 36.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 4.0e-36 156.4 356 37.4
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 5.2e-36 156.0 344 39.0
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 8.8e-36 155.2 339 39.2
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.5e-35 154.5 298 41.6
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 1.5e-35 154.5 359 35.4
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.0e-35 154.1 349 37.0
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 3.4e-35 153.3 111 71.2
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 2.2e-34 150.6 458 32.8
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 2.8e-34 150.2 351 36.2
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.8e-34 150.2 114 68.4
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 8.3e-34 148.7 350 37.1
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 1.1e-33 148.3 352 39.5
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 2.4e-33 147.1 317 40.7
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.4e-33 147.1 120 66.7
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 4.1e-33 146.4 327 39.4
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 5.4e-33 146.0 404 36.1
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.2e-32 144.8 460 29.8
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.7e-32 143.7 112 67.9
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 2.7e-32 143.7 157 54.8
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 3.5e-32 143.3 111 68.5
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 3.5e-32 143.3 109 67.0
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 3.5e-32 143.3 394 33.5
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.5e-32 142.9 120 63.3
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 7.7e-32 142.1 389 37.0
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 7.7e-32 142.1 108 69.4
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.3e-31 141.4 137 57.7
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 1.7e-31 141.0 165 55.2
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 2.3e-31 140.6 115 64.3
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 2.9e-31 140.2 126 58.7
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 2.9e-31 140.2 125 60.8
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 5.0e-31 139.4 117 65.0
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 6.6e-31 139.0 166 54.2
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 8.6e-31 138.7 102 66.7
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.1e-30 138.3 119 61.3
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 1.1e-30 138.3 80 81.2
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 1.1e-30 138.3 370 36.2
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.9e-30 137.5 119 57.1
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.9e-30 137.5 121 60.3
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 1.9e-30 137.5 104 68.3
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 1.9e-30 137.5 104 68.3
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 1.9e-30 137.5 108 66.7
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.9e-30 137.5 91 71.4
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 2.5e-30 137.1 131 59.5
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 2.5e-30 137.1 119 61.3
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 2.5e-30 137.1 112 64.3
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 3.3e-30 136.7 106 65.1
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 3.3e-30 136.7 447 30.2
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 3.3e-30 136.7 111 66.7
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.3e-30 136.7 463 30.2
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 5.6e-30 136.0 119 58.0
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 7.2e-30 135.6 151 53.6
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 7.2e-30 135.6 109 66.1
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 1.2e-29 134.8 122 60.7
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.2e-29 134.8 326 41.7
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.6e-29 134.4 116 60.3
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.6e-29 134.4 364 37.4
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 2.1e-29 134.0 392 33.2
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 2.1e-29 134.0 151 51.7
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 2.1e-29 134.0 123 58.5
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 2.1e-29 134.0 106 67.9
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 6.1e-29 132.5 374 40.1
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 6.1e-29 132.5 411 31.1
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 8.0e-29 132.1 80 76.2
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 1.0e-28 131.7 341 36.7
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.4e-28 131.3 151 51.7
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.8e-28 131.0 123 55.3
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.8e-28 131.0 80 76.2
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 3.0e-28 130.2 395 32.9
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 3.0e-28 130.2 111 63.1
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 3.0e-28 130.2 76 80.3
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 4.0e-28 129.8 410 31.7
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 4.0e-28 129.8 130 53.1
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 4.0e-28 129.8 315 34.6
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 5.2e-28 129.4 108 61.1
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 8.9e-28 128.6 96 67.7
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.2e-27 128.3 100 67.0
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.2e-27 128.3 160 50.6
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 1.2e-27 128.3 126 57.9
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.5e-27 127.9 444 29.1
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.5e-27 127.9 399 34.1
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 1.5e-27 127.9 403 31.3
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 4.4e-27 126.3 269 41.6
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 1.3e-26 124.8 149 56.4
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 6.4e-26 122.5 139 51.1
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 6.4e-26 122.5 139 51.1
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.8e-25 120.9 127 52.8
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 3.2e-25 120.2 393 30.5
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 2.7e-24 117.1 100 59.0
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 7.8e-24 115.5 150 46.0
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 1.7e-23 114.4 304 34.9
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.9e-22 110.9 168 41.1
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-21 108.2 103 58.3
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.6e-21 106.7 114 55.3
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 6.2e-21 105.9 130 53.1
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 3.1e-20 103.6 105 61.0
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 5.2e-20 102.8 311 39.2
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 8.9e-20 102.1 60 78.3
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 4.9e-18 96.3 314 45.2
BcaC06g35790 Brassica carinata HOM05D018474 ORTHO05D006717 1.7e-15 87.8 214 44.4
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 1.9e-14 84.3 81 55.6
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 1.8e-12 77.8 55 67.3
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 4.0e-12 76.6 45 73.3
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 5.2e-12 76.3 83 60.2
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 2.6e-11 73.9 89 52.8
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 5.8e-11 72.8 35 100.0
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 5.8e-11 72.8 35 100.0
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 4.9e-10 69.7 330 30.9
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 4.6e-08 63.2 294 29.6
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 1.0e-07 62.0 84 42.9
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 5.1e-07 59.7 70 55.7
BcaC06g35789 Brassica carinata HOM05D018474 ORTHO05D006717 4.3e-06 56.6 57 61.4


User provided reference genes

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