Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 2.5e-23 111.3 59 100.0
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 2.9e-19 97.8 56 92.9
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 8.5e-19 96.3 56 91.1
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 1.1e-18 95.9 56 89.3
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 1.4e-18 95.5 56 91.1
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 1.9e-18 95.1 56 89.3
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 2.5e-18 94.7 56 87.5
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 2.5e-18 94.7 56 87.5
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 2.5e-18 94.7 56 89.3
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 3.2e-18 94.4 56 87.5
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 5.5e-18 93.6 56 87.5
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 7.2e-18 93.2 56 85.7
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 9.4e-18 92.8 56 87.5
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 9.4e-18 92.8 56 87.5
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 3.6e-17 90.9 56 85.7
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 3.3e-15 84.3 55 78.2
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 3.7e-14 80.9 55 74.5
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 6.3e-14 80.1 52 75.0
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 8.2e-14 79.7 54 75.9
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 1.4e-13 79.0 52 75.0
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 1.4e-13 79.0 52 75.0
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 1.4e-13 79.0 52 78.8
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 1.4e-13 79.0 52 75.0
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 1.8e-13 78.6 52 75.0
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 1.8e-13 78.6 52 73.1
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 2.4e-13 78.2 52 75.0
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 2.4e-13 78.2 52 75.0
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 2.4e-13 78.2 55 70.9
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 3.1e-13 77.8 52 75.0
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 3.1e-13 77.8 52 75.0
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 4.1e-13 77.4 52 73.1
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 4.1e-13 77.4 52 75.0
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 4.1e-13 77.4 52 75.0
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 5.3e-13 77.0 52 75.0
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 5.3e-13 77.0 52 73.1
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 5.3e-13 77.0 52 73.1
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 6.9e-13 76.6 52 75.0
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 6.9e-13 76.6 52 73.1
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 6.9e-13 76.6 52 73.1
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 6.9e-13 76.6 52 73.1
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 6.9e-13 76.6 52 73.1
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 9.1e-13 76.3 52 73.1
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 9.1e-13 76.3 52 73.1
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 9.1e-13 76.3 52 73.1
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 9.1e-13 76.3 52 75.0
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 1.2e-12 75.9 52 73.1
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 1.2e-12 75.9 52 75.0
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 1.2e-12 75.9 52 73.1
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 1.2e-12 75.9 54 72.2
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 1.5e-12 75.5 52 73.1
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 2.0e-12 75.1 52 73.1
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 2.0e-12 75.1 52 73.1
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 2.0e-12 75.1 52 75.0
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 2.6e-12 74.7 52 75.0
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 3.4e-12 74.3 52 71.2
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 4.5e-12 73.9 52 69.2
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 4.5e-12 73.9 52 69.2
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 5.9e-12 73.6 51 72.5
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 5.9e-12 73.6 52 69.2
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 5.9e-12 73.6 52 71.2
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 5.9e-12 73.6 55 67.3
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 5.9e-12 73.6 51 70.6
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 7.7e-12 73.2 52 67.3
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 1.0e-11 72.8 52 69.2
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 1.0e-11 72.8 52 65.4
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.0e-11 72.8 52 67.3
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 1.3e-11 72.4 52 67.3
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 1.3e-11 72.4 52 69.2
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 1.3e-11 72.4 52 69.2
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 1.3e-11 72.4 52 71.2
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 1.7e-11 72.0 52 69.2
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 1.7e-11 72.0 52 69.2
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 2.2e-11 71.6 52 69.2
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 2.9e-11 71.2 52 69.2
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 2.9e-11 71.2 51 70.6
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 3.8e-11 70.9 51 68.6
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 3.8e-11 70.9 52 67.3
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 3.8e-11 70.9 51 70.6
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 3.8e-11 70.9 52 67.3
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 5.0e-11 70.5 56 67.9
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 6.5e-11 70.1 51 68.6
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 6.5e-11 70.1 52 65.4
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 8.5e-11 69.7 52 65.4
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 8.5e-11 69.7 53 64.2
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 2.5e-10 68.2 52 65.4
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 3.2e-10 67.8 51 62.7
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 3.2e-10 67.8 51 66.7
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 5.5e-10 67.0 51 64.7
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 9.4e-10 66.2 52 63.5
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 2.7e-09 64.7 115 41.7
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 3.6e-09 64.3 55 58.2
BraA10t43605Z Brassica rapa HOM05D006914 ORTHO05D008583 4.7e-09 63.9 33 97.0
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 9.7e-07 56.2 51 56.9
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 6.3e-06 53.5 36 75.0
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 6.3e-06 53.5 36 75.0
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 8.2e-06 53.1 36 77.8


User provided reference genes

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