Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 6.9e-224 780.4 419 100.0
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 2.8e-172 609.0 427 81.3
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 1.0e-163 580.5 405 82.5
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 4.3e-157 558.5 403 79.9
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 1.1e-155 553.9 430 72.8
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 2.0e-154 549.7 424 73.3
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 2.0e-154 549.7 420 73.1
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 2.6e-154 549.3 420 73.3
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 1.6e-151 540.0 455 71.6
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 3.5e-151 538.9 422 71.3
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 3.5e-151 538.9 422 71.3
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 8.9e-147 524.2 420 71.2
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 2.4e-144 516.2 423 72.8
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 1.6e-143 513.5 419 68.3
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 6.0e-143 511.5 419 69.0
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 1.3e-129 467.2 428 63.8
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 3.5e-111 406.0 417 55.9
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 1.8e-102 377.1 414 51.7
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 1.7e-100 370.5 415 50.4
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 1.7e-100 370.5 416 49.5
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 8.2e-100 368.2 413 49.6
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 6.9e-99 365.2 417 49.6
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 2.2e-97 360.1 414 50.2
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.5e-96 356.7 436 47.7
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 5.5e-96 355.5 440 47.3
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 5.5e-96 355.5 416 47.8
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 1.6e-95 354.0 416 48.8
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.7e-95 353.2 440 47.3
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 2.3e-94 350.1 417 49.9
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 3.9e-94 349.4 416 49.0
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 5.1e-94 349.0 418 47.1
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 1.7e-92 344.0 416 47.8
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 8.2e-92 341.7 412 46.1
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 2.0e-90 337.0 417 46.0
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 2.0e-90 337.0 399 48.1
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 7.7e-90 335.1 424 44.3
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 1.7e-89 334.0 412 47.1
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 3.2e-88 329.7 420 46.7
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 3.2e-88 329.7 413 47.0
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 7.2e-88 328.6 418 46.7
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 4.7e-87 325.9 504 41.1
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 4.7e-87 325.9 416 46.9
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 6.1e-87 325.5 416 45.4
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 1.4e-86 324.3 419 46.8
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 3.0e-86 323.2 424 44.1
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 6.7e-86 322.0 416 46.4
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 5.7e-85 318.9 418 44.3
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 5.7e-85 318.9 418 46.9
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 7.4e-85 318.5 418 44.0
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 3.7e-84 316.2 419 45.8
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 6.3e-84 315.5 415 44.1
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 1.4e-83 314.3 420 44.0
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 7.0e-83 312.0 401 46.9
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 1.2e-82 311.2 416 45.7
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 1.0e-81 308.1 419 45.8
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 5.0e-81 305.8 396 47.7
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 1.1e-80 304.7 445 41.6
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 5.5e-80 302.4 417 43.4
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 5.5e-80 302.4 416 42.5
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 9.4e-80 301.6 420 45.2
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 2.3e-78 297.0 417 42.7
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 5.7e-77 292.4 346 48.0
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 9.7e-77 291.6 439 41.0
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 2.2e-76 290.4 443 40.9
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 6.3e-76 288.9 359 47.1
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 1.1e-75 288.1 414 41.8
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 4.1e-75 286.2 446 41.0
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 9.1e-75 285.0 432 41.4
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 2.7e-74 283.5 431 41.8
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 1.0e-73 281.6 401 42.1
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.2e-72 276.6 416 43.0
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 6.1e-71 272.3 341 45.2
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 1.0e-70 271.6 479 37.8
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 5.7e-69 265.8 361 46.8
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 1.8e-67 260.8 341 44.0
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 3.5e-66 256.5 437 39.1
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 1.3e-65 254.6 369 40.7
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 2.3e-65 253.8 341 40.2
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 2.9e-65 253.4 331 44.1
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 2.8e-63 246.9 317 44.8
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 2.6e-61 240.4 415 38.8
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.7e-60 237.7 331 44.1
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 1.8e-59 234.2 339 42.8
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 4.5e-58 229.6 173 61.3
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 6.6e-57 225.7 432 34.5
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 9.5e-56 221.9 402 36.8
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 6.1e-55 219.2 356 42.1
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 6.1e-55 219.2 356 42.1
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 4.6e-50 203.0 415 33.3
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 4.6e-50 203.0 418 34.9
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 1.0e-49 201.8 373 37.0
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 1.7e-49 201.1 415 33.5
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 2.6e-45 187.2 177 47.5
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 1.1e-43 181.8 160 50.6
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.9e-43 181.0 332 37.7
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 3.2e-43 180.3 457 30.6
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 6.2e-39 166.0 308 33.4
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 1.4e-38 164.9 144 50.7
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 5.1e-25 119.8 184 45.1
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.1e-23 114.4 82 63.4
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.1e-23 114.4 82 63.4
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 8.1e-23 112.5 206 39.8
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.4e-22 111.7 126 53.2
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 6.9e-22 109.4 303 33.7
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 6.2e-15 86.3 346 26.0
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 5.3e-14 83.2 145 42.1
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 6.9e-14 82.8 184 37.0
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 6.4e-12 76.3 181 34.3
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 3.9e-09 67.0 58 51.7
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 3.7e-07 60.5 136 36.0


User provided reference genes

Program Settings