Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.1e-197 692.2 356 100.0
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 6.1e-197 690.6 356 99.4
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 2.0e-195 685.6 356 98.9
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 4.1e-193 677.9 356 98.0
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 3.5e-192 674.9 356 97.5
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 9.8e-171 603.6 356 88.2
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 3.2e-169 598.6 356 88.8
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 1.6e-168 596.3 356 87.6
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.6e-168 596.3 356 87.1
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.1e-168 595.9 356 86.8
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 2.7e-168 595.5 356 86.5
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 1.7e-167 592.8 356 88.2
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.7e-167 592.8 356 87.1
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 3.9e-167 591.7 356 86.8
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 4.4e-163 578.2 356 85.1
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 4.4e-163 578.2 356 85.1
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 7.3e-158 560.8 356 83.1
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.0e-127 460.7 356 68.5
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.1e-124 448.7 356 68.0
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 5.7e-118 428.3 353 66.0
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 1.8e-111 406.8 355 63.7
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.3e-111 406.4 391 61.4
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 2.4e-108 396.4 355 61.4
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 4.1e-108 395.6 356 63.2
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.2e-107 394.0 357 61.6
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.5e-107 393.7 355 62.0
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.6e-107 392.9 371 60.1
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 4.5e-107 392.1 331 64.4
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 2.2e-106 389.8 361 60.7
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.8e-106 389.0 355 61.4
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 5.0e-106 388.7 375 58.7
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 6.5e-106 388.3 381 59.1
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 8.5e-106 387.9 385 60.3
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.9e-105 386.7 376 58.8
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.6e-104 383.6 362 60.2
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 3.6e-104 382.5 371 57.7
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 7.9e-104 381.3 374 59.4
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 7.9e-104 381.3 362 60.5
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.0e-103 380.9 386 57.5
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.0e-103 380.9 382 58.1
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.8e-103 380.2 375 59.2
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 2.3e-103 379.8 372 60.2
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 2.3e-103 379.8 378 58.7
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 3.0e-103 379.4 372 60.2
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 3.0e-103 379.4 380 57.9
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 3.9e-103 379.0 377 56.8
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 5.1e-103 378.6 375 59.7
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 5.1e-103 378.6 379 58.3
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 6.7e-103 378.3 365 58.9
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.5e-102 377.1 385 57.9
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.6e-102 376.3 378 57.9
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 2.6e-102 376.3 382 57.6
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 4.4e-102 375.6 378 58.7
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 4.4e-102 375.6 379 57.0
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 5.7e-102 375.2 383 59.3
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 9.7e-102 374.4 382 56.3
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.7e-101 373.6 383 57.2
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.1e-100 370.9 385 56.1
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.8e-100 370.2 387 56.1
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.4e-100 369.8 380 56.6
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.1e-100 369.0 396 56.8
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.3e-100 368.6 396 55.8
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.2e-99 367.5 370 56.2
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.2e-99 367.5 371 58.5
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 1.6e-99 367.1 388 56.4
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 1.6e-99 367.1 391 56.3
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.6e-99 366.3 386 55.4
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 3.5e-99 365.9 387 55.3
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 3.5e-99 365.9 353 59.8
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.5e-99 365.5 392 56.4
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 5.9e-99 365.2 387 54.5
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.3e-98 364.0 387 54.0
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 1.3e-98 364.0 393 56.2
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 1.3e-98 364.0 387 55.8
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 3.8e-98 362.5 373 55.0
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 8.5e-98 361.3 388 58.0
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 1.1e-97 360.9 384 55.7
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 5.5e-97 358.6 388 54.4
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 7.2e-97 358.2 355 58.3
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.2e-96 357.5 359 58.2
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.6e-96 357.1 375 57.6
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.6e-96 357.1 374 57.5
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.7e-96 356.3 331 60.4
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 1.0e-95 354.4 353 58.1
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.4e-95 354.0 356 57.3
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 4.0e-95 352.4 357 58.3
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 1.1e-94 350.9 377 56.2
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.7e-93 347.1 372 57.0
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.7e-93 347.1 372 56.7
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 6.3e-93 345.1 307 60.9
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.1e-92 344.4 355 58.3
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.1e-92 344.4 380 53.2
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 2.4e-92 343.2 377 52.5
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 1.6e-91 340.5 373 54.4
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 1.6e-91 340.5 353 57.8
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 4.5e-91 339.0 347 57.1
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.0e-90 337.8 388 52.3
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 1.1e-89 334.3 388 52.6
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.5e-89 333.2 375 54.9
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 8.0e-88 328.2 386 51.8
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.2e-86 324.3 312 58.7
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 2.6e-86 323.2 394 51.3
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 6.3e-85 318.5 394 50.8
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 1.1e-84 317.8 364 51.9
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 4.1e-84 315.8 368 50.5
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.9e-81 307.0 316 53.2
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 1.9e-81 307.0 279 60.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 2.1e-80 303.5 304 54.9
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 2.7e-80 303.1 331 52.3
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 1.5e-78 297.4 396 45.7
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 4.4e-78 295.8 354 53.4
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.4e-76 290.0 328 53.0
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.3e-74 284.3 267 60.3
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 3.7e-69 266.2 281 54.8
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 3.5e-67 259.6 332 51.8
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 3.5e-67 259.6 332 51.8
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 7.8e-67 258.5 263 54.8
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.4e-63 247.7 172 71.5
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 9.8e-62 241.5 444 36.0
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.4e-60 237.7 274 53.3
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.2e-60 236.5 274 52.9
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 2.1e-48 197.2 204 54.4
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 6.0e-43 179.1 315 38.4
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.1e-39 168.3 185 53.0
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 2.4e-39 167.2 193 52.3
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.0e-30 137.5 285 34.0
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.2e-29 134.0 163 50.3
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 3.2e-28 130.2 359 32.9
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 9.3e-28 128.6 83 71.1
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.6e-24 117.9 129 48.8
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.4e-23 114.0 88 68.2
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 2.0e-22 110.9 151 51.0
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.7e-18 95.9 140 49.3
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 8.7e-18 95.5 59 86.4
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 7.4e-17 92.4 119 42.0
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 1.4e-15 88.2 88 52.3
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.6e-11 74.7 184 30.4
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.1e-09 68.6 50 62.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.9e-09 67.8 279 28.3
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.5e-09 67.4 53 60.4
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 4.5e-06 56.6 80 50.0
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 5.9e-06 56.2 165 27.3


User provided reference genes

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