Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 3.8e-58 228.0 119 100.0
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.1e-44 183.3 98 95.9
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.9e-41 172.6 97 90.7
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 6.2e-37 157.5 100 86.0
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 6.2e-37 157.5 100 86.0
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 1.2e-35 153.3 102 82.4
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 1.2e-32 143.3 97 79.4
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 2.1e-32 142.5 100 80.0
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 2.3e-31 139.0 100 79.0
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 2.5e-30 135.6 102 75.5
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 9.6e-30 133.7 102 75.5
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 1.3e-29 133.3 101 73.3
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 8.2e-29 130.6 103 75.7
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 3.1e-28 128.6 68 95.6
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.2e-27 126.7 90 77.8
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 3.4e-27 125.2 107 72.0
C09p49940 Brassica napus HOM05D002024 ORTHO05D007288 1.4e-20 103.2 60 85.0
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.8e-20 102.8 107 61.7
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 5.3e-20 101.3 103 61.2
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 6.9e-20 100.9 104 60.6
BolC9t57846H Brassica oleracea HOM05D005924 ORTHO05D007290 1.2e-19 100.1 60 81.7
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 1.2e-19 100.1 104 60.6
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 1.2e-19 100.1 103 61.2
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.5e-19 99.8 103 63.1
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 7.7e-19 97.4 104 58.7
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 3.8e-18 95.1 103 57.3
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 8.5e-18 94.0 104 58.7
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.1e-17 93.6 104 57.7
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.4e-17 93.2 103 58.3
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 1.9e-17 92.8 103 56.3
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.9e-17 92.8 103 56.3
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.9e-17 92.8 96 59.4
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 2.5e-17 92.4 104 56.7
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 4.2e-17 91.7 105 56.2
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 4.2e-17 91.7 104 56.7
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 5.5e-17 91.3 104 55.8
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 5.5e-17 91.3 100 57.0
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.5e-17 91.3 103 55.3
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 5.5e-17 91.3 104 57.7
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 5.5e-17 91.3 104 56.7
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 9.4e-17 90.5 108 55.6
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 9.4e-17 90.5 104 56.7
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.2e-16 90.1 104 54.8
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 1.2e-16 90.1 98 55.1
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 1.2e-16 90.1 113 49.6
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.6e-16 89.7 103 54.4
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 1.6e-16 89.7 104 57.7
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 1.6e-16 89.7 103 53.4
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.6e-16 89.7 96 59.4
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.1e-16 89.4 113 51.3
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 2.1e-16 89.4 102 52.9
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 2.1e-16 89.4 102 52.9
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 2.1e-16 89.4 104 54.8
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 2.1e-16 89.4 120 48.3
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 2.1e-16 89.4 105 54.3
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.6e-16 88.6 94 56.4
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 3.6e-16 88.6 106 52.8
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.6e-16 88.6 95 58.9
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 3.6e-16 88.6 98 55.1
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 6.1e-16 87.8 110 55.5
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 6.1e-16 87.8 105 49.5
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 7.9e-16 87.4 98 54.1
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.0e-15 87.0 102 50.0
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.0e-15 87.0 98 54.1
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 1.4e-15 86.7 101 50.5
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.4e-15 86.7 109 54.1
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.4e-15 86.7 98 54.1
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.8e-15 86.3 95 55.8
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.8e-15 86.3 95 55.8
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.8e-15 86.3 109 53.2
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.8e-15 86.3 101 52.5
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 1.8e-15 86.3 101 50.5
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 2.3e-15 85.9 71 70.4
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 2.3e-15 85.9 106 52.8
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 2.3e-15 85.9 98 56.1
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 3.0e-15 85.5 101 50.5
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 3.0e-15 85.5 101 51.5
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.0e-15 85.5 96 57.3
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 3.9e-15 85.1 103 55.3
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 3.9e-15 85.1 103 53.4
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 5.1e-15 84.7 99 52.5
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 5.1e-15 84.7 99 52.5
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 6.7e-15 84.3 104 52.9
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 1.1e-14 83.6 96 57.3
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.5e-14 83.2 103 50.5
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.5e-14 83.2 103 54.4
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 2.0e-14 82.8 97 54.6
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 2.0e-14 82.8 93 53.8
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 2.0e-14 82.8 101 50.5
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 2.0e-14 82.8 104 51.0
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 2.0e-14 82.8 97 56.7
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.5e-14 82.4 98 52.0
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 2.5e-14 82.4 98 54.1
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.5e-14 82.4 104 51.0
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 2.5e-14 82.4 96 56.2
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 3.3e-14 82.0 99 53.5
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 4.3e-14 81.6 97 55.7
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 5.7e-14 81.3 106 51.9
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 7.4e-14 80.9 104 52.9
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 7.4e-14 80.9 103 53.4
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 7.4e-14 80.9 105 52.4
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 9.7e-14 80.5 98 51.0
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 9.7e-14 80.5 96 55.2
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 2.2e-13 79.3 124 44.4
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 2.2e-13 79.3 105 53.3
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 2.2e-13 79.3 96 47.9
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 2.2e-13 79.3 98 51.0
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 3.7e-13 78.6 100 50.0
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.7e-13 78.6 93 50.5
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.7e-13 78.6 98 51.0
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 3.1e-12 75.5 94 52.1
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 9.1e-12 73.9 106 50.0
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 9.1e-12 73.9 106 46.2
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 9.1e-12 73.9 95 47.4
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 1.2e-11 73.6 96 54.2
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.2e-11 73.6 93 47.3
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.2e-11 73.6 99 49.5
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 3.4e-11 72.0 65 58.5
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 5.9e-11 71.2 103 50.5
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 5.9e-11 71.2 105 49.5
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 7.7e-11 70.9 106 45.3
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 2.5e-09 65.9 107 42.1
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 4.2e-09 65.1 96 44.8
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 9.4e-09 63.9 85 50.6
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 4.7e-08 61.6 106 41.5
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 6.7e-07 57.8 107 41.1
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.5e-06 56.6 108 38.0
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 4.4e-06 55.1 100 40.0
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 7.4e-06 54.3 99 39.4


User provided reference genes

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