Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 3.3e-104 381.7 193 100.0
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 1.5e-101 372.9 193 97.9
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 5.8e-101 370.9 193 98.4
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 5.8e-101 370.9 193 98.4
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.2e-98 363.2 193 95.3
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.8e-97 359.4 185 97.8
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 3.3e-96 355.1 192 92.7
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 2.8e-95 352.1 193 91.2
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 4.8e-95 351.3 192 91.1
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 1.1e-94 350.1 192 90.6
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 6.4e-92 340.9 193 90.2
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.1e-91 340.1 193 89.6
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.6e-90 336.3 194 89.2
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.0e-89 333.6 197 85.3
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.1e-88 330.1 194 87.1
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.1e-88 330.1 194 87.6
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.5e-88 329.7 194 88.1
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 5.3e-86 321.2 195 84.6
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 3.5e-82 308.5 187 84.0
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 6.5e-76 287.7 198 73.2
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.0e-68 263.8 195 67.2
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 6.5e-68 261.2 193 64.2
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 8.5e-68 260.8 193 64.2
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 5.5e-67 258.1 193 67.4
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 5.5e-67 258.1 196 63.8
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 1.2e-66 256.9 190 67.4
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.6e-66 256.5 195 63.6
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 6.1e-66 254.6 194 63.9
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.8e-65 253.1 186 66.1
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.3e-65 252.7 194 64.4
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 2.3e-65 252.7 192 64.6
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 2.3e-65 252.7 192 64.1
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 8.8e-65 250.8 194 64.4
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 8.8e-65 250.8 191 64.4
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 1.5e-64 250.0 198 64.1
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.5e-64 250.0 194 63.9
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 1.5e-64 250.0 193 63.2
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 3.3e-64 248.8 184 65.8
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.4e-64 248.4 186 68.3
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 4.4e-64 248.4 193 65.3
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 5.7e-64 248.1 187 67.4
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.4e-64 247.7 194 63.9
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 7.4e-64 247.7 193 64.8
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 7.4e-64 247.7 192 65.1
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 1.7e-63 246.5 193 63.7
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.8e-63 245.7 186 66.7
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 2.8e-63 245.7 191 64.4
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 3.7e-63 245.4 194 63.9
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 6.3e-63 244.6 192 65.6
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 6.3e-63 244.6 192 63.0
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 8.2e-63 244.2 194 60.8
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.8e-62 243.0 192 63.5
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 9.1e-62 240.7 195 61.5
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 9.1e-62 240.7 191 61.3
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 9.1e-62 240.7 189 63.0
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 3.5e-61 238.8 192 64.6
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 7.7e-61 237.7 189 60.8
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 7.7e-61 237.7 190 63.2
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.0e-60 237.3 188 62.2
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.3e-60 236.9 189 59.8
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.3e-60 236.9 192 62.0
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 1.7e-60 236.5 190 60.5
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.7e-60 236.5 189 61.9
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.2e-60 236.1 188 62.2
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 6.5e-60 234.6 187 61.5
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 8.5e-60 234.2 195 60.5
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 3.2e-59 232.3 187 61.0
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 4.2e-59 231.9 198 59.1
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 5.5e-59 231.5 192 60.9
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 2.7e-58 229.2 191 60.7
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 4.7e-58 228.4 204 57.8
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 4.7e-58 228.4 188 59.6
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 6.1e-58 228.0 194 59.8
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 6.1e-58 228.0 186 62.4
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 8.0e-58 227.6 194 59.8
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.0e-57 227.3 192 58.9
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.8e-57 226.5 195 57.4
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 3.0e-57 225.7 214 54.7
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 5.2e-57 224.9 248 49.6
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 5.2e-57 224.9 192 56.2
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 3.3e-56 222.2 278 45.3
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.7e-55 218.8 240 51.2
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 2.4e-54 216.1 153 66.0
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 7.0e-54 214.5 191 57.1
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 2.0e-53 213.0 194 56.2
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.6e-53 212.6 150 68.0
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.0e-52 210.7 192 58.3
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.5e-51 206.1 189 52.4
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 3.2e-51 205.7 195 58.5
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 4.2e-51 205.3 193 51.8
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 1.6e-50 203.4 146 67.8
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 2.1e-50 203.0 142 66.9
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 2.0e-48 196.4 191 55.5
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 2.2e-47 193.0 224 48.7
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 5.3e-46 188.3 298 40.9
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 9.1e-46 187.6 187 52.9
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 5.9e-45 184.9 191 53.9
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 2.2e-44 183.0 185 49.7
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.9e-43 179.9 152 59.9
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 5.5e-43 178.3 161 54.7
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 7.2e-43 177.9 330 36.4
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 9.4e-43 177.6 145 62.1
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 3.7e-39 165.6 195 46.2
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 4.9e-39 165.2 197 46.2
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 6.3e-39 164.9 196 44.9
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.4e-38 162.9 119 65.5
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.0e-37 159.8 146 53.4
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 7.7e-37 157.9 123 64.2
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.3e-36 156.4 189 45.0
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 2.8e-34 149.4 109 67.0
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 3.6e-34 149.1 195 44.6
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 5.4e-30 135.2 102 61.8
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.2e-26 124.0 92 63.0
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 4.0e-25 119.0 94 56.4
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 8.9e-25 117.9 193 41.5
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 3.4e-24 115.9 99 57.6
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 9.8e-24 114.4 121 49.6
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.7e-23 113.6 139 51.1
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 6.4e-23 111.7 54 96.3
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.4e-22 110.5 52 98.1
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.4e-22 110.5 52 98.1
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 9.5e-19 97.8 83 56.6
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.1e-17 94.4 75 61.3
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.4e-17 94.0 150 34.7
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 2.0e-16 90.1 201 35.3
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-15 86.7 89 50.6
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 3.7e-15 85.9 90 48.9
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.9e-14 83.6 89 46.1
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 7.1e-14 81.6 76 53.9
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 9.2e-14 81.3 194 32.5
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-13 80.9 89 46.1
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 2.3e-12 76.6 54 64.8
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.9e-11 73.6 52 63.5
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.5e-11 73.2 66 59.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 9.5e-11 71.2 59 62.7
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.2e-10 68.6 86 47.7
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.8e-09 67.0 49 63.3


User provided reference genes

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