Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 9.5e-104 380.2 191 100.0
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.4e-101 371.7 191 97.9
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.9e-96 355.9 191 94.2
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.9e-96 355.9 191 94.2
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.4e-91 339.7 196 90.3
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.1e-91 337.4 197 88.3
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 5.6e-88 327.8 189 86.8
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.3e-86 322.4 189 87.8
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 5.2e-86 321.2 191 83.2
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.4e-85 318.2 191 82.7
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.1e-83 313.5 200 79.5
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.4e-77 292.0 189 78.8
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 8.1e-71 270.8 177 78.0
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.9e-64 249.6 159 74.8
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 4.3e-64 248.4 152 77.0
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 7.4e-64 247.7 149 75.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 9.6e-64 247.3 157 73.2
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.1e-63 246.1 155 74.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 3.6e-63 245.4 168 72.0
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.8e-63 245.0 175 69.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 6.2e-63 244.6 154 73.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.1e-62 243.8 167 71.9
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.4e-62 243.4 156 74.4
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 3.1e-62 242.3 156 73.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 9.0e-62 240.7 162 71.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.2e-61 240.4 178 67.4
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.5e-61 240.0 158 70.9
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 2.0e-61 239.6 152 73.0
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.6e-61 239.2 175 68.6
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.4e-61 238.8 166 71.1
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.8e-61 238.0 153 73.2
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 5.8e-61 238.0 185 64.9
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 7.6e-61 237.7 165 70.9
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 9.9e-61 237.3 165 67.3
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.3e-60 236.9 156 74.4
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 4.9e-60 235.0 173 67.1
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 4.9e-60 235.0 171 67.8
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 3.2e-59 232.3 175 66.3
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 3.2e-59 232.3 164 70.7
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 3.2e-59 232.3 167 65.3
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 5.5e-59 231.5 151 74.2
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 9.3e-59 230.7 166 69.9
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.2e-58 230.3 120 90.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.6e-58 229.9 173 65.3
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.7e-58 229.2 197 60.4
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.6e-58 228.4 203 58.6
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 6.0e-58 228.0 158 71.5
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 6.0e-58 228.0 191 61.8
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.0e-57 227.3 195 62.6
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.3e-57 226.9 163 68.1
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.8e-57 226.5 155 68.4
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 2.3e-57 226.1 151 75.5
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.3e-57 226.1 170 65.9
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 3.0e-57 225.7 151 73.5
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 8.7e-57 224.2 155 71.6
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 4.8e-55 218.4 151 68.9
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.4e-54 216.9 191 59.2
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.8e-54 216.5 177 62.7
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.3e-54 214.9 153 68.6
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 9.0e-54 214.2 173 63.6
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.0e-53 213.0 218 53.2
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 3.4e-53 212.2 206 56.3
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.0e-52 210.7 175 62.3
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 2.9e-52 209.1 154 66.2
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.9e-51 206.5 153 66.0
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 3.2e-51 205.7 151 62.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.2e-51 205.3 180 57.8
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 7.1e-51 204.5 154 66.9
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.2e-50 203.8 157 63.1
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.7e-50 202.6 151 65.6
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.7e-50 202.6 153 66.0
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 3.5e-50 202.2 149 63.1
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.3e-49 200.3 163 60.1
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 2.3e-49 199.5 156 60.3
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 3.0e-49 199.1 154 64.9
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 5.1e-49 198.4 175 60.0
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.1e-49 198.4 173 57.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.7e-49 198.0 153 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.5e-48 196.8 159 61.0
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 9.6e-48 194.1 119 79.0
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 9.6e-48 194.1 148 60.1
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.3e-47 193.7 152 61.2
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 6.3e-47 191.4 119 75.6
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.4e-46 190.3 112 80.4
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 2.4e-46 189.5 155 57.4
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.1e-46 188.7 124 74.2
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.3e-46 188.3 156 58.3
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 6.9e-46 188.0 152 57.9
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 6.9e-46 188.0 150 61.3
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 6.9e-46 188.0 112 80.4
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.2e-45 187.2 108 82.4
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.5e-45 186.8 112 77.7
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 2.6e-45 186.0 163 57.1
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.4e-45 185.7 153 56.2
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 4.5e-45 185.3 152 62.5
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.2e-44 183.0 109 79.8
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 3.8e-44 182.2 168 56.0
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 3.8e-44 182.2 155 59.4
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 8.5e-44 181.0 160 56.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.1e-43 180.6 113 75.2
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.1e-43 180.6 113 76.1
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 2.5e-43 179.5 146 60.3
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 3.2e-43 179.1 120 74.2
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.5e-43 178.3 163 55.2
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 7.2e-43 177.9 158 58.9
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 9.3e-43 177.6 112 75.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.2e-42 177.2 127 70.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 4.6e-42 175.3 112 74.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 6.1e-42 174.9 119 69.7
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.8e-41 173.3 112 76.8
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.1e-41 171.8 112 72.3
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 6.7e-41 171.4 146 58.9
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 6.7e-41 171.4 116 69.8
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.1e-40 170.6 144 59.0
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 3.3e-40 169.1 148 57.4
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 6.3e-39 164.9 154 53.9
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.8e-38 163.3 116 63.8
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 6.9e-38 161.4 176 50.6
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.6e-37 159.5 129 61.2
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 3.4e-37 159.1 151 51.0
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 5.9e-37 158.3 146 54.8
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.3e-36 157.1 112 67.9
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.3e-36 157.1 152 55.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-34 150.6 129 58.1
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.8e-33 146.7 130 61.5
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.5e-32 143.7 153 54.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.2e-31 139.8 111 59.5
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.3e-31 138.3 156 49.4
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 8.2e-31 137.9 96 64.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 6.9e-30 134.8 176 47.7
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-29 134.0 77 80.5
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 3.9e-25 119.0 104 60.6
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.2e-25 118.6 69 79.7
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 6.7e-25 118.2 122 52.5
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 7.4e-24 114.8 70 77.1
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 6.3e-23 111.7 156 42.3
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 6.3e-23 111.7 90 63.3
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.0e-21 106.7 77 57.1
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.5e-21 105.9 70 70.0
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.7e-20 103.6 147 44.2
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.0e-20 102.1 71 66.2
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 3.2e-19 99.4 135 42.2
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.6e-18 95.9 86 55.8
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.1e-18 95.1 123 47.2
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 2.3e-17 93.2 118 47.5
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.3e-15 87.4 55 72.7
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 6.5e-12 75.1 47 72.3
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 8.5e-12 74.7 69 56.5
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.1e-11 74.3 43 76.7
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.2e-10 70.9 40 77.5
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.0e-09 67.8 39 76.9
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 4.0e-09 65.9 44 61.4
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.5e-08 63.9 55 56.4
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 2.0e-08 63.5 40 67.5
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 2.6e-08 63.2 47 63.8
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 3.4e-08 62.8 38 68.4
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.4e-08 62.4 38 73.7
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.4e-08 62.4 38 71.1
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 7.5e-08 61.6 86 44.2
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 1.3e-07 60.8 39 71.8
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.3e-07 60.8 39 76.9
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.7e-07 59.3 35 74.3
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.7e-07 59.3 47 46.8
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 3.7e-07 59.3 41 63.4
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 3.7e-07 59.3 43 62.8
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 1.4e-06 57.4 95 30.5
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 1.8e-06 57.0 41 56.1
ATR0620G116 Amborella trichopoda HOM05D004274 ORTHO05D004980 7.0e-06 55.1 40 55.0
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 7.0e-06 55.1 36 61.1


User provided reference genes

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