Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 1.7e-117 426.0 211 100.0
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 4.8e-117 424.5 211 99.5
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 4.8e-117 424.5 211 99.5
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 4.4e-110 401.4 211 94.3
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.7e-109 399.4 213 95.3
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 2.2e-109 399.1 212 93.9
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 3.1e-95 352.1 214 84.1
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 3.1e-95 352.1 214 84.1
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.2e-94 350.1 212 85.4
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 2.4e-92 342.4 212 83.0
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.6e-91 339.7 212 82.1
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.6e-91 339.7 213 84.0
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 2.7e-91 339.0 212 82.5
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 5.6e-89 331.3 213 81.2
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 2.3e-87 325.9 217 77.9
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.6e-83 313.2 214 75.7
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.6e-83 313.2 214 75.7
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 2.1e-83 312.8 208 79.3
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.0e-82 310.5 214 74.8
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 4.0e-63 245.4 163 73.6
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 5.3e-63 245.0 214 62.1
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 9.0e-63 244.2 211 62.1
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 2.6e-62 242.7 202 65.3
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.6e-62 242.7 175 68.6
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 3.4e-62 242.3 163 73.6
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.7e-61 240.0 185 68.1
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.7e-61 240.0 169 71.0
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.7e-61 240.0 217 60.4
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 2.2e-61 239.6 156 75.0
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 2.2e-61 239.6 159 73.0
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.8e-61 238.8 169 70.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 6.4e-61 238.0 227 59.9
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 1.1e-60 237.3 161 71.4
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.1e-60 237.3 158 73.4
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 2.4e-60 236.1 159 71.7
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 3.2e-60 235.7 158 72.8
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 3.2e-60 235.7 159 72.3
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 3.2e-60 235.7 131 84.7
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 5.4e-60 235.0 160 71.2
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 5.4e-60 235.0 176 68.2
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 5.4e-60 235.0 176 67.6
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 5.4e-60 235.0 162 71.0
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 9.3e-60 234.2 164 72.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.2e-59 233.8 142 78.2
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 1.2e-59 233.8 146 77.4
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 2.1e-59 233.0 170 68.8
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 2.1e-59 233.0 170 68.8
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 3.5e-59 232.3 211 60.2
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 3.5e-59 232.3 182 64.8
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 4.6e-59 231.9 224 58.0
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 7.9e-59 231.1 211 60.2
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 7.9e-59 231.1 193 61.7
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 7.9e-59 231.1 205 62.4
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 7.9e-59 231.1 170 71.2
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.3e-58 230.3 194 62.9
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.3e-58 230.3 152 74.3
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 2.3e-58 229.6 160 70.6
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 3.9e-58 228.8 151 72.8
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 3.9e-58 228.8 139 79.1
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.1e-58 228.4 202 60.4
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 8.7e-58 227.6 211 59.2
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 8.7e-58 227.6 211 59.2
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.1e-57 227.3 212 58.5
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.5e-57 226.9 179 65.9
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.9e-57 226.5 153 71.9
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 2.5e-57 226.1 205 60.5
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 4.3e-57 225.3 184 63.0
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 9.6e-57 224.2 177 67.2
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.3e-56 223.8 155 72.9
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.3e-56 223.8 155 72.9
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.3e-56 223.8 155 72.9
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.3e-56 223.8 145 73.8
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.1e-56 223.0 196 62.2
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 2.1e-56 223.0 131 80.9
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 3.7e-56 222.2 157 69.4
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 3.7e-56 222.2 154 70.1
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 8.1e-56 221.1 174 65.5
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.1e-55 220.7 154 71.4
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.4e-55 220.3 149 71.1
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 2.4e-55 219.5 130 79.2
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 2.4e-55 219.5 190 60.0
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 3.1e-55 219.2 163 66.3
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 3.1e-55 219.2 151 68.2
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 4.0e-55 218.8 182 64.8
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 4.0e-55 218.8 155 67.7
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 5.3e-55 218.4 151 68.2
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 5.3e-55 218.4 151 68.2
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.2e-54 217.2 207 58.5
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.5e-54 216.9 149 69.8
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 2.0e-54 216.5 162 67.3
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 2.0e-54 216.5 176 63.6
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 2.0e-54 216.5 170 65.9
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 3.4e-54 215.7 192 60.4
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.7e-53 213.4 159 69.2
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 3.8e-53 212.2 202 58.4
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 3.8e-53 212.2 128 77.3
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 8.4e-53 211.1 192 58.3
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 8.4e-53 211.1 160 66.2
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 4.2e-52 208.8 201 57.7
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 4.2e-52 208.8 145 68.3
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 7.1e-52 208.0 165 64.2
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 7.1e-52 208.0 127 76.4
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 7.1e-52 208.0 138 72.5
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 7.1e-52 208.0 141 70.9
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 9.3e-52 207.6 195 57.4
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.6e-51 206.8 202 57.9
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 2.7e-51 206.1 176 60.8
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 6.0e-51 204.9 124 77.4
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 8.7e-50 201.1 213 54.5
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 9.0e-47 191.0 142 69.0
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.8e-46 188.3 208 51.9
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 1.7e-45 186.8 131 68.7
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.1e-43 179.9 183 55.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.5e-43 179.1 133 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 4.6e-43 178.7 162 55.6
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 6.1e-43 178.3 129 65.1
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.0e-42 177.6 146 58.2
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 8.7e-42 174.5 152 55.9
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.9e-41 173.3 199 48.2
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.9e-41 173.3 199 48.2
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 2.8e-32 142.9 102 71.6
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.5e-30 137.1 158 52.5
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 1.3e-29 134.0 78 80.8
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 2.9e-29 132.9 77 81.8
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 6.1e-27 125.2 118 55.1
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.3e-26 123.2 140 46.4
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 5.9e-22 108.6 121 44.6
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 8.0e-19 98.2 139 39.6
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 2.3e-18 96.7 81 61.7
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 4.4e-17 92.4 62 67.7
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 3.1e-15 86.3 59 66.1
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.9e-12 77.0 57 63.2
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 3.2e-12 76.3 49 69.4
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 4.2e-12 75.9 51 68.6
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 7.2e-12 75.1 108 46.3
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 8.0e-11 71.6 101 41.6
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 1.4e-10 70.9 33 97.0
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 1.5e-09 67.4 60 61.7
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 7.5e-09 65.1 45 62.2
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.2e-06 57.8 74 44.6
Pp3c19_3370 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.9e-06 55.5 114 34.2


User provided reference genes

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