Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19896 Brassica carinata HOM05D004895 ORTHO05D003385 2.9e-44 181.4 86 100.0
BolC9t57864H Brassica oleracea HOM05D004895 ORTHO05D003385 5.9e-37 157.1 75 100.0
C09p50110 Brassica napus HOM05D004895 ORTHO05D003385 2.5e-35 151.8 75 97.3
AL2G33910 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 4.0e-25 117.9 76 76.3
Thhalv10019621m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 2.0e-24 115.5 77 74.0
Carub.0006s3727 Capsella rubella HOM05D004895 ORTHO05D003385 2.6e-24 115.2 80 65.0
AT1G80960 Arabidopsis thaliana HOM05D004895 ORTHO05D003385 7.5e-24 113.6 84 64.3
AL2G40610 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 1.7e-23 112.5 74 75.7
BcaB02g07241 Brassica carinata HOM05D004895 ORTHO05D003385 8.5e-20 100.1 83 63.9
BolC3t15995H Brassica oleracea HOM05D004895 ORTHO05D003385 2.1e-18 95.5 69 66.7
BcaC01g06685 Brassica carinata HOM05D004895 ORTHO05D003385 8.0e-18 93.6 86 54.7
C03p36840 Brassica napus HOM05D004895 ORTHO05D003385 3.0e-17 91.7 69 63.8
BcaB02g06905 Brassica carinata HOM05D004895 ORTHO05D003385 8.8e-17 90.1 84 56.0
A05p31100 Brassica napus HOM05D004895 ORTHO05D003385 1.2e-16 89.7 84 59.5
BraA05t21951Z Brassica rapa HOM05D004895 ORTHO05D003385 1.2e-16 89.7 84 59.5
BraA10t42600Z Brassica rapa HOM05D004895 ORTHO05D003385 1.3e-15 86.3 82 51.2
A10p03240 Brassica napus HOM05D004895 ORTHO05D003385 2.2e-15 85.5 82 50.0
Carub.0003s3337 Capsella rubella HOM05D004895 ORTHO05D003385 2.2e-15 85.5 84 54.8
CARHR073430 Cardamine hirsuta HOM05D004895 ORTHO05D003385 3.7e-15 84.7 71 62.0
AL5G43100 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 4.1e-14 81.3 82 54.9
Carub.0001s3755 Capsella rubella HOM05D004895 ORTHO05D003385 4.1e-14 81.3 77 58.4
BcaB02g06904 Brassica carinata HOM05D004895 ORTHO05D003385 5.4e-14 80.9 87 54.0
Sp5g33570 Schrenkiella parvula HOM05D004895 ORTHO05D003385 2.7e-13 78.6 85 51.8
Carub.0007s2703 Capsella rubella HOM05D004895 ORTHO05D003385 3.5e-13 78.2 77 54.5
CARHR073530 Cardamine hirsuta HOM05D004895 ORTHO05D003385 1.0e-12 76.6 76 56.6
AL7G40680 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 1.3e-12 76.3 75 56.0
AL7G40710 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 1.3e-12 76.3 75 56.0
Sp7g13290 Schrenkiella parvula HOM05D004895 ORTHO05D003385 1.7e-12 75.9 71 60.6
AL2G38840 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 5.0e-12 74.3 81 53.1
BolC4t24744H Brassica oleracea HOM05D004895 ORTHO05D003385 5.0e-12 74.3 78 50.0
BolC6t38131H Brassica oleracea HOM05D004895 ORTHO05D003385 8.6e-12 73.6 69 58.0
AT3G60790 Arabidopsis thaliana HOM05D004895 ORTHO05D003385 1.1e-11 73.2 90 48.9
BcaC08g47420 Brassica carinata HOM05D004895 ORTHO05D003385 2.5e-11 72.0 87 51.7
A09p52940 Brassica napus HOM05D004895 ORTHO05D003385 2.5e-11 72.0 83 50.6
C06p52410 Brassica napus HOM05D004895 ORTHO05D003385 2.5e-11 72.0 87 51.7
BolC6t40260H Brassica oleracea HOM05D004895 ORTHO05D003385 2.5e-11 72.0 87 51.7
BraA09t40727Z Brassica rapa HOM05D004895 ORTHO05D003385 2.5e-11 72.0 83 50.6
Carub.0002s1368 Capsella rubella HOM05D004895 ORTHO05D003385 4.2e-11 71.2 74 51.4
BcaC03g15815 Brassica carinata HOM05D004895 ORTHO05D003385 5.5e-11 70.9 78 51.3
C07p01370 Brassica napus HOM05D004895 ORTHO05D003385 5.5e-11 70.9 78 51.3
A07p43760 Brassica napus HOM05D004895 ORTHO05D003385 7.2e-11 70.5 87 51.7
BraA07t31885Z Brassica rapa HOM05D004895 ORTHO05D003385 7.2e-11 70.5 87 51.7
C08p35730 Brassica napus HOM05D004895 ORTHO05D003385 1.6e-10 69.3 81 46.9
BolC8t51164H Brassica oleracea HOM05D004895 ORTHO05D003385 1.6e-10 69.3 81 46.9
AT1G78470 Arabidopsis thaliana HOM05D004895 ORTHO05D003385 2.1e-10 68.9 80 53.8
AL2G25940 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 2.8e-10 68.6 77 49.4
A04p01420 Brassica napus HOM05D004895 ORTHO05D003385 2.8e-10 68.6 90 44.4
A09p52970 Brassica napus HOM05D004895 ORTHO05D003385 2.8e-10 68.6 83 49.4
BcaB03g16021 Brassica carinata HOM05D004895 ORTHO05D003385 3.6e-10 68.2 87 49.4
BcaB03g16024 Brassica carinata HOM05D004895 ORTHO05D003385 3.6e-10 68.2 87 49.4
A02p22200 Brassica napus HOM05D004895 ORTHO05D003385 8.0e-10 67.0 78 52.6
BraA02t07225Z Brassica rapa HOM05D004895 ORTHO05D003385 8.0e-10 67.0 78 52.6
BraA04t15861Z Brassica rapa HOM05D004895 ORTHO05D003385 8.0e-10 67.0 90 43.3
Carub.0005s2754 Capsella rubella HOM05D004895 ORTHO05D003385 8.0e-10 67.0 77 46.8
BcaC02g10179 Brassica carinata HOM05D004895 ORTHO05D003385 1.0e-09 66.6 87 43.7
A04p01440 Brassica napus HOM05D004895 ORTHO05D003385 1.0e-09 66.6 87 42.5
BraA04t15862Z Brassica rapa HOM05D004895 ORTHO05D003385 1.0e-09 66.6 87 42.5
BcaC02g10185 Brassica carinata HOM05D004895 ORTHO05D003385 1.4e-09 66.2 89 46.1
C04p31810 Brassica napus HOM05D004895 ORTHO05D003385 1.4e-09 66.2 89 46.1
BolC4t24729H Brassica oleracea HOM05D004895 ORTHO05D003385 1.4e-09 66.2 89 46.1
C04p31900 Brassica napus HOM05D004895 ORTHO05D003385 1.8e-09 65.9 87 43.7
Sp5g02460 Schrenkiella parvula HOM05D004895 ORTHO05D003385 1.8e-09 65.9 77 48.1
Carub.0002s1371 Capsella rubella HOM05D004895 ORTHO05D003385 5.2e-09 64.3 76 50.0
AL2G25930 Arabidopsis lyrata HOM05D004895 ORTHO05D003385 6.8e-09 63.9 84 44.0
Sp1g05910 Schrenkiella parvula HOM05D004895 ORTHO05D003385 6.8e-09 63.9 51 60.8
Carub.0002s1372 Capsella rubella HOM05D004895 ORTHO05D003385 1.2e-08 63.2 68 47.1
BcaC05g24436 Brassica carinata HOM05D004895 ORTHO05D003385 2.0e-08 62.4 82 45.1
C05p03000 Brassica napus HOM05D004895 ORTHO05D003385 2.0e-08 62.4 82 45.1
BolC5t29081H Brassica oleracea HOM05D004895 ORTHO05D003385 2.0e-08 62.4 82 45.1
Sp4g04880 Schrenkiella parvula HOM05D004895 ORTHO05D003385 2.0e-08 62.4 79 41.8
AT1G67390 Arabidopsis thaliana HOM05D004895 ORTHO05D003385 2.6e-08 62.0 84 46.4
A10p03250 Brassica napus HOM05D004895 ORTHO05D003385 4.4e-08 61.2 56 53.6
BcaC07g40600 Brassica carinata HOM05D004895 ORTHO05D003385 5.7e-08 60.8 77 46.8
C08p35740 Brassica napus HOM05D004895 ORTHO05D003385 5.7e-08 60.8 77 46.8
BolC8t51165H Brassica oleracea HOM05D004895 ORTHO05D003385 5.7e-08 60.8 77 46.8
BcaB05g25141 Brassica carinata HOM05D004895 ORTHO05D003385 7.5e-08 60.5 80 47.5
Carub.0002s1369 Capsella rubella HOM05D004895 ORTHO05D003385 7.5e-08 60.5 76 44.7
CARHR171180 Cardamine hirsuta HOM05D004895 ORTHO05D003385 1.7e-07 59.3 77 42.9
BcaC07g42640 Brassica carinata HOM05D004895 ORTHO05D003385 4.9e-07 57.8 79 43.0
Sp2g01400 Schrenkiella parvula HOM05D004895 ORTHO05D003385 4.9e-07 57.8 81 45.7
A09p52950 Brassica napus HOM05D004895 ORTHO05D003385 6.3e-07 57.4 77 45.5
A09p52990 Brassica napus HOM05D004895 ORTHO05D003385 6.3e-07 57.4 77 45.5
A09p53020 Brassica napus HOM05D004895 ORTHO05D003385 6.3e-07 57.4 77 45.5
BraA09t40728Z Brassica rapa HOM05D004895 ORTHO05D003385 6.3e-07 57.4 77 45.5
Thhalv10027373m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 1.4e-06 56.2 52 53.8
Thhalv10002356m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 1.8e-06 55.8 64 48.4
Thhalv10022454m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 1.8e-06 55.8 76 48.7
Thhalv10027314m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 1.8e-06 55.8 64 48.4
Thhalv10027541m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 2.4e-06 55.5 52 53.8
Thhalv10002355m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 7.0e-06 53.9 81 45.7
Thhalv10027448m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 7.0e-06 53.9 81 45.7
BraA10t42601Z Brassica rapa HOM05D004895 ORTHO05D003385 9.2e-06 53.5 56 48.2
Thhalv10027212m.g Eutrema salsugineum HOM05D004895 ORTHO05D003385 9.2e-06 53.5 86 45.3


User provided reference genes

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