Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-257 892.9 455 100.0
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 3.0e-124 449.5 255 91.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-123 447.6 255 90.6
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 3.1e-121 439.5 255 88.2
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.1e-121 439.1 249 91.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 7.7e-120 434.9 249 90.4
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 7.7e-120 434.9 249 90.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 2.9e-119 433.0 255 86.3
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.9e-119 433.0 255 87.5
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 9.5e-118 427.9 254 85.8
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 2.0e-115 420.2 256 84.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 3.3e-110 402.9 242 87.2
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 3.7e-106 389.4 257 77.8
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.7e-103 380.6 254 76.4
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.2e-99 367.9 254 73.2
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.6e-99 366.7 257 72.0
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.6e-99 366.7 259 69.9
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 5.8e-99 365.5 249 74.3
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.3e-98 364.4 253 74.3
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.9e-98 363.2 244 74.6
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 2.9e-98 363.2 247 75.3
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 3.7e-98 362.8 251 74.1
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 4.9e-98 362.5 265 70.9
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 4.9e-98 362.5 260 71.9
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 6.4e-98 362.1 266 71.4
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 6.4e-98 362.1 259 71.0
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 8.3e-98 361.7 253 73.1
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 2.4e-97 360.1 254 73.6
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 7.0e-97 358.6 256 72.3
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 7.8e-96 355.1 270 65.9
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 7.8e-96 355.1 245 73.1
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.0e-95 354.8 262 70.2
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.0e-95 354.8 267 68.5
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.3e-95 354.4 249 73.1
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.3e-95 353.6 264 68.6
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.0e-95 353.2 249 73.1
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.9e-95 352.8 247 73.7
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.9e-95 352.8 265 70.6
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 5.0e-95 352.4 263 68.4
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 5.0e-95 352.4 279 68.1
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 8.6e-95 351.7 268 67.9
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.1e-94 351.3 266 69.5
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-94 350.9 254 75.6
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.5e-94 350.9 247 73.7
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 5.6e-94 349.0 253 68.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 7.3e-94 348.6 249 71.5
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 7.3e-94 348.6 263 68.8
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.8e-93 346.7 264 68.6
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 4.7e-93 345.9 249 70.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 4.7e-93 345.9 250 70.8
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.1e-93 345.1 249 69.9
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.8e-92 344.0 248 73.0
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.8e-92 344.0 253 68.0
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 5.2e-92 342.4 244 71.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 5.2e-92 342.4 238 72.7
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 6.8e-92 342.0 284 63.4
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 6.8e-92 342.0 270 67.0
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 6.8e-92 342.0 248 71.8
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 8.9e-92 341.7 278 63.7
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 3.4e-91 339.7 198 86.9
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 4.4e-91 339.3 252 70.6
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 5.8e-91 339.0 238 72.7
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 7.5e-91 338.6 242 70.2
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 9.9e-91 338.2 270 67.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.2e-90 337.0 244 70.1
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.7e-90 336.3 273 65.2
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.1e-89 334.7 206 86.4
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.9e-89 334.0 259 67.2
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 2.4e-89 333.6 326 61.0
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 4.1e-89 332.8 250 66.8
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 7.1e-89 332.0 244 68.0
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 7.1e-89 332.0 249 67.1
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 7.1e-89 332.0 249 67.1
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 2.7e-88 330.1 246 69.1
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 7.8e-88 328.6 223 74.4
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.0e-87 328.2 238 69.7
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.3e-87 327.0 265 67.2
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 3.9e-87 326.2 253 67.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 5.1e-87 325.9 256 66.0
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 6.6e-87 325.5 269 64.7
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.1e-86 324.7 242 67.4
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.5e-86 324.3 221 73.8
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 3.6e-85 319.7 224 72.8
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 8.1e-85 318.5 275 61.8
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 6.8e-84 315.5 262 61.8
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 3.4e-83 313.2 239 67.4
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 5.4e-81 305.8 258 62.4
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.6e-80 304.3 249 64.7
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 6.0e-80 302.4 237 65.4
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.0e-79 301.6 236 66.1
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.3e-79 301.2 218 71.6
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 6.6e-79 298.9 254 62.2
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.1e-78 298.1 244 63.1
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-76 290.8 278 58.3
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 6.9e-76 288.9 224 68.3
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.3e-74 284.6 293 54.6
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.9e-74 283.5 213 67.1
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.1e-73 281.6 196 72.4
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-70 271.2 314 54.1
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.9e-70 270.8 198 71.2
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.0e-68 263.1 244 59.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 3.4e-67 260.0 223 61.9
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.0e-63 248.4 234 56.8
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.0e-63 248.4 191 64.4
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.1e-60 238.4 172 69.8
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-60 238.4 168 70.8
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.9e-57 227.6 224 61.2
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 2.3e-55 220.7 231 51.9
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.5e-51 208.0 221 52.9
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 3.4e-51 206.8 231 47.6
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.0e-50 205.3 241 46.5
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 7.1e-49 199.1 214 48.1
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.4e-44 184.1 197 53.8
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-42 177.9 165 54.5
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.1e-40 171.0 96 92.7
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 4.6e-40 169.9 107 85.0
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.5e-38 164.9 105 79.0
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.8e-37 160.6 107 81.3
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 5.0e-34 149.8 107 76.6
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 5.3e-28 129.8 131 54.2
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.5e-27 128.3 73 91.8
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.1e-25 122.1 280 36.8
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 3.6e-24 117.1 79 78.5
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 6.1e-24 116.3 200 45.0
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.1e-24 116.3 92 63.0
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 8.0e-24 115.9 200 44.5
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-21 107.8 92 55.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.6e-19 100.9 78 60.3
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.2e-18 97.8 170 35.9
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 5.0e-18 96.7 102 55.9
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 4.2e-17 93.6 59 72.9
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 5.5e-17 93.2 56 83.9
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 5.5e-17 93.2 56 83.9
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-16 90.9 72 69.4
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 5.2e-15 86.7 93 55.9
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 2.4e-12 77.8 56 71.4
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.0e-10 72.4 50 70.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 6.5e-10 69.7 110 40.9
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 5.5e-09 66.6 89 47.2
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 4.7e-08 63.5 144 33.3
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.0e-07 62.4 55 56.4
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.4e-07 62.0 198 25.3
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.0e-07 60.5 53 52.8
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 6.8e-07 59.7 49 57.1
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 8.8e-07 59.3 49 57.1


User provided reference genes

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