Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1956.4 1000 100.0
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1956.4 1000 100.0
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1919.1 1000 98.1
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1917.1 1000 97.8
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1907.5 1000 97.2
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1847.4 1003 93.7
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1755.3 1003 89.8
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1746.5 1004 87.7
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1740.7 1004 88.2
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1730.7 1004 87.4
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1702.2 1004 86.5
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1628.6 1013 82.7
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1500.3 1008 76.0
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1308.1 1014 65.4
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1305.4 1012 65.2
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1301.6 1013 64.9
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1301.6 1015 65.1
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1300.8 1014 65.8
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1290.8 1015 65.0
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1283.1 1014 64.3
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1276.5 1015 64.7
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1276.2 1007 64.7
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1274.2 1015 64.2
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1274.2 1015 64.0
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1269.6 1018 63.8
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 1015 63.5
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 986 64.7
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1267.3 1021 63.7
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1256.1 997 64.1
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1255.4 1016 64.1
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1255.0 1080 60.6
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1254.6 1017 63.3
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1251.1 1014 63.1
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1246.5 997 63.7
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 0.0e+00 1243.0 693 90.2
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1242.3 991 64.0
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1234.6 1015 61.7
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1231.1 1002 62.7
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1227.6 1016 62.2
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1227.6 1012 61.5
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1224.9 1012 62.0
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1224.5 1016 61.9
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1223.4 1017 62.0
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1220.3 1017 61.1
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1214.9 1016 61.1
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1212.6 1016 60.9
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1202.6 1077 59.1
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1183.7 1060 59.2
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1181.4 1016 60.3
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1179.1 1016 60.3
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1175.2 1007 60.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1175.2 1016 60.2
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1173.3 1019 59.2
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1172.9 1021 60.1
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1171.0 1012 59.9
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1170.2 1010 59.3
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1167.9 1017 60.2
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1164.4 990 60.4
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1164.1 1023 60.2
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1160.6 1031 59.7
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1156.0 1010 60.0
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1154.0 1018 59.0
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1152.1 1017 58.4
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1149.8 1017 58.6
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1149.4 1013 58.4
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1147.1 1023 59.1
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1140.6 1020 58.5
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1140.2 1006 58.9
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1139.4 1014 58.4
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1137.5 1004 59.1
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1136.7 1018 57.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1125.9 1012 57.9
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1124.8 1012 57.0
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1124.4 1011 57.8
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1117.1 1010 58.2
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1115.1 1011 57.2
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1111.3 1011 57.1
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1105.1 778 70.6
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1085.1 1011 56.3
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1082.4 1013 56.3
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 6.2e-311 1070.8 1008 55.9
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.5e-304 1049.7 778 68.4
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 3.6e-303 1045.0 991 56.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 6.3e-300 1034.2 1018 54.6
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 1.9e-296 1022.7 796 65.2
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 4.4e-285 984.9 1019 52.7
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 6.4e-276 954.5 1019 51.4
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 7.1e-251 871.3 599 71.3
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.3e-247 860.5 612 69.0
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.4e-246 857.1 985 48.8
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-236 822.4 1018 45.4
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-233 813.5 1020 45.0
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 7.4e-232 808.1 986 46.2
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 2.4e-214 750.0 757 51.9
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 4.7e-210 735.7 877 46.9
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.7e-207 726.1 774 49.0
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.2e-203 713.0 1014 43.2
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 2.9e-188 663.3 544 62.5
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.9e-188 663.3 503 64.8
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 2.6e-184 650.2 453 72.4
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 2.9e-180 636.7 433 74.6
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.6e-173 614.4 552 58.3
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 2.3e-172 610.5 1027 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 8.0e-170 602.1 1045 37.4
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.8e-161 574.3 572 54.4
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 8.9e-161 572.0 528 58.0
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 6.6e-148 529.3 419 63.7
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 9.3e-142 508.8 1028 33.1
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 7.3e-139 499.2 507 51.5
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.0e-128 464.5 508 49.4
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.0e-124 452.2 461 51.0
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 4.2e-118 430.3 627 40.5
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 9.0e-113 412.5 1065 29.3
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 6.1e-109 399.8 237 82.7
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 3.1e-105 387.5 296 69.6
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.0e-104 384.8 427 48.9
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.3e-98 365.5 297 60.3
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 3.7e-98 364.0 527 41.4
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.4e-97 362.1 237 77.2
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 3.3e-70 271.2 453 38.2
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 4.0e-60 237.7 391 40.9
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 3.7e-58 231.1 331 40.2
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.1e-57 227.6 313 41.2
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.4e-57 227.3 311 41.5
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-56 225.7 362 39.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 1.0e-55 223.0 149 79.9
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 1.0e-55 223.0 149 79.9
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 3.9e-55 221.1 362 38.4
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 5.6e-46 190.7 110 82.7
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 6.8e-44 183.7 168 63.1
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 3.4e-43 181.4 228 46.1
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 4.4e-43 181.0 768 26.4
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-41 175.3 514 30.2
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-40 171.4 510 29.4
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 9.5e-38 163.3 122 75.4
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.2e-37 162.9 803 25.4
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 3.4e-35 154.8 122 74.6
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 2.3e-31 142.1 754 23.9
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 3.9e-31 141.4 166 48.8
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 5.1e-31 141.0 312 33.7
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-30 139.4 346 33.5
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 2.5e-30 138.7 94 80.9
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 9.6e-30 136.7 76 90.8
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 4.3e-22 111.3 139 43.2
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 7.3e-22 110.5 84 64.3
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 2.6e-19 102.1 89 55.1
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 6.4e-18 97.4 156 37.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.9e-17 95.9 54 88.9
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.9e-14 85.9 149 41.6
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-13 83.2 51 74.5
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 3.1e-12 78.6 426 22.8
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 3.1e-12 78.6 70 60.0
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 6.9e-12 77.4 65 58.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 9.0e-12 77.0 46 80.4


User provided reference genes

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