Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.1e-61 238.8 116 100.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 5.9e-40 167.5 140 64.3
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 5.9e-40 167.5 140 64.3
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 7.7e-40 167.2 140 63.6
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.3e-39 166.4 140 63.6
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 2.2e-39 165.6 140 63.6
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 6.5e-39 164.1 140 62.9
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 6.5e-39 164.1 140 61.4
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 6.5e-39 164.1 140 61.4
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.4e-38 162.9 140 62.1
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.4e-38 162.9 140 62.1
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 2.5e-38 162.2 140 62.1
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 7.9e-37 157.1 140 61.4
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.1e-35 153.3 131 62.6
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.5e-35 152.9 98 81.6
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.2e-34 149.1 140 56.4
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.2e-34 149.1 129 61.2
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 2.8e-34 148.7 130 60.8
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-34 148.3 130 59.2
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-34 148.3 130 59.2
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.7e-34 148.3 140 53.6
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 9.4e-30 133.7 139 48.9
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.4e-30 133.7 139 48.2
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 9.4e-30 133.7 139 48.2
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.6e-29 131.7 139 48.2
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.7e-29 131.3 139 47.5
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 4.7e-29 131.3 140 46.4
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.0e-28 130.2 139 47.5
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 3.0e-28 128.6 140 46.4
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 5.2e-28 127.9 140 45.0
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 5.2e-28 127.9 140 45.7
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 8.8e-28 127.1 140 46.4
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.1e-27 126.7 139 46.0
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.5e-27 126.3 139 46.8
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 2.6e-27 125.6 139 44.6
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 5.7e-27 124.4 140 44.3
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 7.4e-27 124.0 140 44.3
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 7.4e-27 124.0 140 43.6
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.3e-26 123.2 139 44.6
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.3e-26 123.2 140 45.0
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.7e-26 122.9 140 44.3
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 2.8e-26 122.1 140 44.3
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 3.7e-26 121.7 140 43.6
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 4.8e-26 121.3 139 43.9
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 4.8e-26 121.3 139 43.9
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 8.2e-26 120.6 139 43.9
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.1e-25 120.2 140 43.6
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.1e-25 120.2 140 43.6
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.4e-25 119.0 139 43.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 3.1e-25 118.6 140 42.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 5.3e-25 117.9 140 41.4
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 7.0e-25 117.5 139 41.7
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 7.0e-25 117.5 139 43.2
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.2e-24 116.7 140 42.1
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.2e-24 116.7 128 46.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.6e-24 116.3 139 42.4
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.0e-23 113.6 140 41.4
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.3e-23 113.2 139 41.7
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.2e-23 112.5 140 41.4
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 2.9e-23 112.1 125 45.6
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.9e-23 112.1 128 44.5
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.5e-22 109.8 74 78.4
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 4.2e-22 108.2 130 43.1
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 4.2e-22 108.2 141 36.2
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 5.5e-22 107.8 140 42.1
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 5.5e-22 107.8 128 43.0
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 9.4e-22 107.1 132 42.4
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 9.4e-22 107.1 132 42.4
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.2e-21 106.7 139 42.4
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.6e-21 106.3 130 42.3
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.1e-21 105.9 139 42.4
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.1e-21 105.9 140 40.7
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 3.6e-21 105.1 137 42.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.6e-21 105.1 140 40.7
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.0e-20 103.6 124 41.9
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.0e-20 103.6 128 40.6
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 4.0e-20 101.7 139 36.0
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 4.0e-20 101.7 139 38.1
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 5.2e-20 101.3 130 39.2
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 8.8e-20 100.5 123 43.1
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 8.8e-20 100.5 123 43.1
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 2.6e-19 99.0 141 38.3
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 2.6e-19 99.0 141 38.3
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.4e-19 98.6 120 42.5
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 4.4e-19 98.2 122 41.0
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 5.7e-19 97.8 139 36.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 7.5e-19 97.4 123 38.2
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 7.5e-19 97.4 142 37.3
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 9.7e-19 97.1 141 37.6
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 9.7e-19 97.1 141 37.6
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.3e-18 96.7 124 37.1
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.3e-18 96.7 129 38.0
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.7e-18 96.3 118 40.7
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.2e-18 95.9 115 41.7
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 2.2e-18 95.9 140 37.1
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.8e-18 95.5 125 36.8
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.8e-18 95.5 142 35.9
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 2.8e-18 95.5 142 37.3
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 3.7e-18 95.1 143 38.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 3.7e-18 95.1 142 38.7
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 4.8e-18 94.7 123 37.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 8.3e-18 94.0 118 39.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.1e-17 93.6 123 37.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.4e-17 93.2 122 36.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.4e-17 92.4 142 36.6
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 3.1e-17 92.0 142 36.6
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 3.1e-17 92.0 142 38.0
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 5.3e-17 91.3 120 35.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 5.3e-17 91.3 120 35.8
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 7.0e-17 90.9 140 35.0
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 2.0e-16 89.4 154 32.5
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.7e-15 86.3 121 35.5
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 6.5e-15 84.3 115 34.8
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.1e-14 83.6 110 45.5
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 4.2e-14 81.6 54 64.8
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 4.2e-14 81.6 143 34.3
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.6e-13 79.7 122 32.0
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.1e-13 79.3 139 35.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 1.4e-12 76.6 140 32.1
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.8e-12 76.3 147 32.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 6.8e-12 74.3 55 56.4
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 8.8e-12 73.9 44 81.8
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 2.0e-11 72.8 140 35.0
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 2.6e-11 72.4 113 31.0
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.3e-10 70.1 134 33.6
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.7e-10 69.7 123 36.6
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 2.8e-10 68.9 52 53.8
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.1e-09 67.0 124 33.9
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.8e-09 66.2 55 54.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.2e-08 63.5 35 82.9
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.2e-08 63.5 119 32.8
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.6e-08 63.2 55 54.5
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 5.9e-08 61.2 130 30.0
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.0e-07 60.5 43 62.8
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.9e-07 58.9 134 30.6
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 6.6e-07 57.8 55 47.3
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.1e-06 57.0 136 33.1
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-06 55.8 47 55.3
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-06 55.8 106 35.8
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.2e-06 55.1 46 50.0
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 9.5e-06 53.9 27 92.6


User provided reference genes

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