Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 5.1e-206 721.1 426 100.0
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 4.1e-200 701.4 424 97.6
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.1e-199 699.1 425 96.9
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.6e-198 694.1 421 97.1
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 5.2e-195 684.5 426 95.8
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.7e-191 672.2 439 89.3
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.9e-173 612.8 435 83.9
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 9.3e-168 594.0 435 82.1
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.2e-161 572.8 428 83.6
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.6e-159 565.5 437 81.7
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 8.8e-158 560.8 439 76.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.1e-152 543.9 429 80.9
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 6.1e-151 538.1 435 79.1
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 8.2e-148 527.7 435 74.7
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.4e-139 500.4 436 67.9
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 9.1e-139 497.7 436 66.7
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.2e-138 497.3 448 67.4
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 1.5e-136 490.3 436 67.7
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 9.4e-136 487.6 442 66.3
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-134 484.2 435 67.4
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-134 483.8 435 67.4
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.0e-134 482.6 439 66.5
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 8.8e-134 481.1 449 65.5
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 3.3e-133 479.2 435 66.2
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.7e-133 478.4 435 66.7
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 5.7e-133 478.4 447 66.4
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 9.1e-131 471.1 436 65.1
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 3.5e-130 469.2 435 65.7
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 4.5e-130 468.8 436 65.4
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 5.0e-129 465.3 447 64.2
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.9e-128 463.4 449 63.3
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.9e-128 463.4 413 67.3
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.2e-128 462.6 445 64.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 5.5e-128 461.8 443 61.9
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 5.5e-128 461.8 443 61.9
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.2e-127 460.7 456 62.3
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.1e-127 459.9 442 62.4
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.6e-127 459.1 449 62.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 3.4e-125 452.6 434 61.8
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.5e-125 451.4 446 59.6
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 9.8e-125 451.1 432 61.6
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.7e-124 450.3 435 63.2
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.4e-123 447.2 447 59.7
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.4e-123 447.2 441 60.8
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.4e-123 447.2 446 61.7
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.1e-123 445.7 465 60.0
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 7.0e-123 444.9 437 61.8
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 2.0e-122 443.4 427 64.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 3.5e-122 442.6 443 60.9
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.0e-121 441.0 444 59.0
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.3e-121 440.7 436 61.0
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.7e-121 440.3 436 60.8
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 5.0e-121 438.7 434 61.3
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.5e-120 437.2 443 59.6
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.5e-120 437.2 434 60.8
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 2.5e-120 436.4 437 60.9
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.6e-119 433.7 443 60.3
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.6e-119 433.7 458 58.1
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.8e-119 433.0 441 59.4
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 3.6e-119 432.6 439 60.8
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 6.1e-119 431.8 443 58.7
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.8e-118 430.3 446 59.6
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 2.3e-118 429.9 440 59.8
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 3.0e-118 429.5 448 58.7
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.2e-117 427.6 421 61.0
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.2e-117 427.6 452 61.5
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 4.4e-117 425.6 440 59.3
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 5.7e-117 425.2 448 58.5
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.3e-116 424.1 440 59.5
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.3e-116 424.1 445 59.6
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.8e-116 422.9 441 59.4
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 3.7e-116 422.5 448 57.1
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.9e-116 422.2 453 58.7
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.1e-115 421.0 428 62.1
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.1e-115 421.0 442 59.0
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 4.1e-115 419.1 448 59.2
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 5.4e-115 418.7 442 58.1
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 7.0e-115 418.3 436 59.6
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.2e-114 417.5 436 59.2
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.6e-114 417.2 441 59.4
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.6e-114 417.2 442 58.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 7.8e-114 414.8 453 57.2
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.7e-113 413.7 442 58.1
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.3e-113 413.3 444 56.3
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 8.9e-110 401.4 433 58.0
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 8.9e-110 401.4 433 58.0
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 2.0e-109 400.2 436 57.8
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.4e-109 399.1 441 57.1
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.8e-109 397.9 378 65.1
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 4.9e-108 395.6 476 55.3
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.6e-106 389.0 442 56.6
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 4.3e-104 382.5 414 59.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.8e-103 379.8 444 55.2
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 3.6e-103 379.4 417 55.9
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 6.2e-103 378.6 482 53.3
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-99 367.9 352 63.4
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.4e-94 350.9 456 50.0
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 2.6e-93 346.7 305 72.5
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 4.3e-88 329.3 346 61.6
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 8.1e-87 325.1 361 56.8
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.4e-86 323.6 451 48.3
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.0e-85 320.5 314 64.0
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.9e-84 315.8 425 49.4
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.2e-83 312.8 424 50.0
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 6.0e-82 308.9 338 64.5
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.9e-80 303.9 261 75.5
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.9e-80 303.9 442 48.2
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 7.3e-80 302.0 213 86.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.8e-78 297.4 390 52.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 3.8e-76 289.7 459 44.0
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 3.8e-76 289.7 417 46.5
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.4e-70 271.2 272 62.1
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 9.0e-70 268.5 454 43.4
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.6e-69 266.9 398 46.2
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.3e-60 238.0 270 54.1
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 4.9e-60 236.1 246 58.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-46 191.8 298 47.3
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.1e-46 191.8 249 53.0
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.5e-45 188.0 213 55.4
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 2.9e-44 183.7 364 39.0
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 8.5e-44 182.2 440 36.1
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.2e-42 178.3 196 54.6
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 4.6e-42 176.4 360 40.0
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.4e-40 169.1 186 56.5
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.4e-37 160.2 438 34.0
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.8e-36 156.8 166 59.0
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 3.8e-36 156.8 269 43.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 7.2e-35 152.5 144 63.2
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 3.7e-31 140.2 128 64.1
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 4.5e-29 133.3 123 69.1
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 4.2e-27 126.7 152 57.2
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.2e-27 125.9 163 51.5
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 2.1e-26 124.4 106 64.2
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 4.7e-26 123.2 175 49.7
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 4.4e-24 116.7 181 49.2
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 3.7e-23 113.6 83 72.3
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 5.3e-22 109.8 147 49.0
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 1.5e-19 101.7 213 40.4
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 9.8e-16 89.0 58 81.0
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 2.2e-15 87.8 57 82.5
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.8e-14 84.7 95 56.8


User provided reference genes

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