Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19802 Brassica carinata HOM05D003281 ORTHO05D004128 2.6e-68 261.9 132 100.0
BcaC04g19805 Brassica carinata HOM05D003281 ORTHO05D004128 1.3e-27 126.7 90 74.4
C09p51540 Brassica napus HOM05D003281 ORTHO05D004128 3.2e-26 122.1 58 100.0
BolC9t58011H Brassica oleracea HOM05D003281 ORTHO05D004128 3.2e-26 122.1 58 100.0
BolC9t58009H Brassica oleracea HOM05D003281 ORTHO05D004128 8.8e-24 114.0 58 91.4
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.1e-23 113.6 89 67.4
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.5e-23 113.2 89 67.4
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.5e-23 113.2 89 67.4
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 1.5e-23 113.2 89 67.4
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.5e-23 113.2 89 67.4
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 2.0e-23 112.8 89 66.3
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 4.4e-23 111.7 89 66.3
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 4.4e-23 111.7 89 66.3
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.4e-23 111.7 89 66.3
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 4.4e-23 111.7 89 66.3
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 4.4e-23 111.7 89 66.3
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 5.7e-23 111.3 89 66.3
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 1.7e-22 109.8 89 66.3
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 2.2e-22 109.4 66 83.3
A04p28850 Brassica napus HOM05D003281 ORTHO05D004128 4.1e-21 105.1 68 75.0
BraA09t41745Z Brassica rapa HOM05D003281 ORTHO05D004128 4.1e-21 105.1 68 75.0
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 4.1e-21 105.1 68 76.5
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 4.1e-21 105.1 89 61.8
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 6.9e-21 104.4 68 75.0
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 9.1e-21 104.0 68 76.5
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 9.1e-21 104.0 89 60.7
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 9.1e-21 104.0 98 61.2
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 9.1e-21 104.0 89 61.8
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 1.5e-20 103.2 68 73.5
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.5e-20 103.2 89 61.8
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 1.5e-20 103.2 124 53.2
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 1.5e-20 103.2 68 73.5
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 2.0e-20 102.8 68 75.0
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 2.0e-20 102.8 89 60.7
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.0e-20 102.8 68 73.5
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.0e-20 102.8 68 73.5
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 2.0e-20 102.8 98 61.2
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 2.0e-20 102.8 68 75.0
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.6e-20 102.4 89 60.7
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 2.6e-20 102.4 89 60.7
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 2.6e-20 102.4 89 60.7
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 3.4e-20 102.1 89 60.7
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 3.4e-20 102.1 68 73.5
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 4.5e-20 101.7 68 73.5
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 4.5e-20 101.7 68 73.5
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 4.5e-20 101.7 68 73.5
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 5.9e-20 101.3 68 72.1
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 5.9e-20 101.3 68 73.5
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 5.9e-20 101.3 89 61.8
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 5.9e-20 101.3 68 73.5
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 7.7e-20 100.9 89 60.7
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 7.7e-20 100.9 89 60.7
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 7.7e-20 100.9 89 62.9
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 1.0e-19 100.5 68 72.1
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 1.0e-19 100.5 68 73.5
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 1.0e-19 100.5 98 59.2
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 1.3e-19 100.1 89 60.7
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.3e-19 100.1 68 72.1
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 1.3e-19 100.1 68 72.1
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.7e-19 99.8 68 72.1
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 1.7e-19 99.8 68 72.1
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.2e-19 99.4 68 72.1
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.2e-19 99.4 98 58.2
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.2e-19 99.4 98 58.2
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 2.2e-19 99.4 68 73.5
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 2.9e-19 99.0 68 70.6
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 2.9e-19 99.0 68 70.6
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 2.9e-19 99.0 68 70.6
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 2.9e-19 99.0 68 70.6
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 2.9e-19 99.0 125 45.6
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 3.8e-19 98.6 68 73.5
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 3.8e-19 98.6 68 72.1
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 3.8e-19 98.6 68 72.1
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 3.8e-19 98.6 68 72.1
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 5.0e-19 98.2 124 50.8
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 5.0e-19 98.2 68 70.6
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 5.0e-19 98.2 68 72.1
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 5.0e-19 98.2 89 58.4
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 5.0e-19 98.2 68 70.6
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 5.0e-19 98.2 68 70.6
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 6.5e-19 97.8 124 49.2
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 6.5e-19 97.8 68 70.6
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 6.5e-19 97.8 68 72.1
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 6.5e-19 97.8 89 61.8
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 1.1e-18 97.1 124 52.4
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 1.1e-18 97.1 124 52.4
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.4e-18 96.7 68 70.6
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 1.4e-18 96.7 124 52.4
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 1.9e-18 96.3 68 72.1
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.9e-18 96.3 68 69.1
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 2.5e-18 95.9 124 51.6
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 2.5e-18 95.9 64 73.4
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 3.2e-18 95.5 68 70.6
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 3.2e-18 95.5 63 74.6
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 3.2e-18 95.5 68 70.6
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 3.2e-18 95.5 89 58.4
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 4.2e-18 95.1 89 58.4
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 4.2e-18 95.1 68 70.6
FAN06G1854 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.2e-18 95.1 68 70.6
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 4.2e-18 95.1 68 70.6
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 4.2e-18 95.1 124 51.6
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 5.5e-18 94.7 124 47.6
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 7.2e-18 94.4 89 57.3
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 7.2e-18 94.4 66 71.2
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 7.2e-18 94.4 89 57.3
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 7.2e-18 94.4 89 57.3
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 9.4e-18 94.0 68 69.1
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 9.4e-18 94.0 89 56.2
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 1.2e-17 93.6 66 71.2
Haze_06128 Corylus avellana HOM05D003281 ORTHO05D004128 1.6e-17 93.2 66 68.2
unitig_46.g18375 Utricularia gibba HOM05D003281 ORTHO05D004128 1.6e-17 93.2 65 72.3
unitig_48.g30290 Utricularia gibba HOM05D003281 ORTHO05D004128 1.6e-17 93.2 68 69.1
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 2.1e-17 92.8 67 70.1
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 3.6e-17 92.0 68 70.6
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 3.6e-17 92.0 64 73.4
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 6.1e-17 91.3 66 68.2
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 6.1e-17 91.3 61 70.5
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 8.0e-17 90.9 64 68.8
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 1.4e-16 90.1 89 56.2
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 2.3e-16 89.4 68 67.6
EL10Ac1g01790 Beta vulgaris HOM05D003281 ORTHO05D004128 3.0e-16 89.0 65 66.2
A05p32240 Brassica napus HOM05D003281 ORTHO05D004128 3.9e-16 88.6 58 79.3
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 3.9e-16 88.6 90 53.3
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 3.9e-16 88.6 65 66.2
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 1.5e-15 86.7 89 51.7
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 1.5e-15 86.7 89 53.9
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 7.4e-15 84.3 89 52.8
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.2e-14 82.8 66 66.7
EL10Ac1g02079 Beta vulgaris HOM05D003281 ORTHO05D004128 4.8e-14 81.6 80 55.0
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 6.3e-14 81.3 66 66.7
HPP92_009463 Vanilla planifolia HOM05D003281 ORTHO05D004128 6.3e-14 81.3 64 62.5
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 8.2e-14 80.9 66 66.7
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 1.8e-13 79.7 67 62.7
SHI29159 Sapria himalayana HOM05D003281 ORTHO05D000001 2.4e-13 79.3 58 62.1
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 4.1e-13 78.6 67 59.7
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 7.0e-13 77.8 65 63.1
C09p51500 Brassica napus HOM05D003281 ORTHO05D004128 1.2e-12 77.0 39 87.2
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 4.5e-12 75.1 60 60.0
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 4.5e-12 75.1 132 37.9
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 1.0e-11 73.9 66 57.6
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 1.3e-11 73.6 90 43.3
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 3.8e-11 72.0 70 54.3
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 8.5e-11 70.9 59 55.9
Eucgr.A00699 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.5e-10 69.3 75 50.7
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.5e-10 69.3 146 41.1
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 3.6e-09 65.5 52 63.5
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 4.7e-09 65.1 79 45.6
unitig_46.g18364 Utricularia gibba HOM05D003281 ORTHO05D004128 8.0e-09 64.3 61 59.0
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 1.4e-08 63.5 77 45.5


User provided reference genes

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