Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19793 Brassica carinata HOM05D035001 ORTHO05D032577 1.9e-59 232.3 113 100.0
A01p38580 Brassica napus HOM05D035001 ORTHO05D032577 5.2e-49 197.6 119 84.9
BraA01t03926Z Brassica rapa HOM05D035001 ORTHO05D032577 5.2e-49 197.6 119 84.9
Sp3g13440 Schrenkiella parvula HOM05D001464 ORTHO05D005092 3.5e-29 131.7 137 59.9
BcaB06g29547 Brassica carinata HOM05D001464 ORTHO05D005092 3.8e-28 128.3 141 57.4
A05p34240 Brassica napus HOM05D001464 ORTHO05D005092 3.8e-28 128.3 141 57.4
BolC5t33885H Brassica oleracea HOM05D001464 ORTHO05D005092 3.8e-28 128.3 141 57.4
BraA05t22244Z Brassica rapa HOM05D001464 ORTHO05D005092 3.8e-28 128.3 141 57.4
Thhalv10020987m.g Eutrema salsugineum HOM05D001464 ORTHO05D005092 6.6e-28 127.5 137 58.4
C05p52000 Brassica napus HOM05D001464 ORTHO05D005092 8.6e-28 127.1 141 56.7
Carub.0003s1489 Capsella rubella HOM05D001464 ORTHO05D005092 4.7e-26 121.3 134 55.2
AL3G27630 Arabidopsis lyrata HOM05D001464 ORTHO05D005092 8.0e-26 120.6 138 52.9
AT3G15240 Arabidopsis thaliana HOM05D001464 ORTHO05D005092 4.0e-25 118.2 136 53.7
CARHR090220 Cardamine hirsuta HOM05D001464 ORTHO05D005092 2.0e-24 115.9 135 52.6
BcaC09g48480 Brassica carinata HOM05D001464 ORTHO05D005092 6.6e-20 100.9 70 78.6
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 3.1e-17 92.0 103 56.3
C01p49330 Brassica napus HOM05D001464 ORTHO05D040125 1.9e-14 82.8 104 50.0
BolC1t04892H Brassica oleracea HOM05D001464 ORTHO05D040125 5.4e-14 81.3 104 49.0
Aa31LG8G2430 Aethionema arabicum HOM05D001464 ORTHO05D005092 1.6e-13 79.7 131 42.7
THA.LOC104818088 Tarenaya hassleriana HOM05D001464 ORTHO05D005092 2.3e-12 75.9 137 42.3
COL.COLO4_36706 Corchorus olitorius HOM05D001464 ORTHO05D005092 1.7e-07 59.7 77 44.2
Oeu019304.1 Olea europaea HOM05D001464 ORTHO05D005092 1.7e-07 59.7 71 45.1
AUR62019456 Chenopodium quinoa HOM05D001464 ORTHO05D005092 3.7e-07 58.5 126 35.7
PGR031G3595 Punica granatum HOM05D001464 ORTHO05D005092 4.9e-07 58.2 78 42.3
HanXRQChr12g0364051 Helianthus annuus HOM05D001464 ORTHO05D005092 6.4e-07 57.8 132 36.4
CSS0014920 Camellia sinensis var. sinensis HOM05D001464 ORTHO05D005092 8.3e-07 57.4 125 37.6
DCAR_019566 Daucus carota HOM05D001464 ORTHO05D005092 8.3e-07 57.4 61 47.5
Oeu025363.1 Olea europaea HOM05D001464 ORTHO05D005092 8.3e-07 57.4 71 42.3
MSTRG.12896 Avicennia marina HOM05D001464 ORTHO05D005092 1.1e-06 57.0 61 49.2
AUR62036174 Chenopodium quinoa HOM05D001464 ORTHO05D005092 1.1e-06 57.0 126 34.9
Nn1g04168 Nelumbo nucifera HOM05D001464 ORTHO05D005092 1.4e-06 56.6 67 52.2
vmacro09525 Vaccinium macrocarpon HOM05D001464 ORTHO05D005092 1.4e-06 56.6 74 41.9
Actinidia35242 Actinidia chinensis HOM05D001464 ORTHO05D005092 1.9e-06 56.2 69 46.4
CANSAT56G3346 Cannabis sativa HOM05D001464 ORTHO05D005092 1.9e-06 56.2 63 49.2
Cpa.g.c43713 Carica papaya HOM05D001464 ORTHO05D005092 1.9e-06 56.2 65 47.7
Hma1.2p1_0387F.1_g141970 Hydrangea macrophylla HOM05D001464 ORTHO05D005092 1.9e-06 56.2 75 41.3
Thecc.07G095300 Theobroma cacao HOM05D001464 ORTHO05D005092 1.9e-06 56.2 126 34.1
CANSAT56G0549 Cannabis sativa HOM05D001464 ORTHO05D005092 2.4e-06 55.8 63 49.2
EL10Ac4g08223 Beta vulgaris HOM05D001464 ORTHO05D005092 3.2e-06 55.5 70 44.3
Eucgr.F03300 Eucalyptus grandis HOM05D001464 ORTHO05D005092 4.1e-06 55.1 160 29.4
Glyma.12G226200 Glycine max HOM05D001464 ORTHO05D005092 9.2e-06 53.9 82 41.5
Lalb_Chr03g0030741 Lupinus albus HOM05D001464 ORTHO05D005092 9.2e-06 53.9 157 29.9


User provided reference genes

Program Settings