Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.3e-171 606.3 303 100.0
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.3e-171 606.3 303 100.0
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.3e-171 606.3 303 100.0
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.6e-169 599.4 303 98.7
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 4.6e-169 597.8 303 98.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.1e-158 562.4 303 94.4
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.7e-153 545.4 307 90.9
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 4.0e-149 531.6 305 88.9
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 2.6e-148 528.9 305 89.2
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 9.3e-146 520.4 305 87.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.5e-132 476.5 304 80.9
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.2e-118 429.5 302 75.5
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.7e-115 419.9 248 88.3
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.6e-100 370.2 298 63.8
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 4.5e-100 368.6 292 65.4
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 2.9e-99 365.9 301 64.8
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 1.1e-98 364.0 308 62.0
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.2e-98 362.5 306 64.1
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 7.2e-98 361.3 308 63.6
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 9.5e-98 360.9 300 64.7
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 9.5e-98 360.9 297 62.6
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 2.8e-97 359.4 306 62.4
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 3.6e-97 359.0 297 64.0
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 6.8e-96 354.8 302 61.9
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 8.8e-96 354.4 293 62.5
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.2e-95 354.0 300 62.0
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.5e-95 353.6 302 62.3
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.4e-95 352.4 293 62.8
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.4e-95 352.1 297 63.0
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 5.7e-95 351.7 301 63.1
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 7.5e-95 351.3 306 61.8
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.3e-94 350.5 293 62.5
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.1e-93 347.4 299 58.5
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.8e-93 346.7 304 59.5
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.2e-92 344.0 297 61.6
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.2e-92 344.0 285 62.5
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.7e-92 342.8 334 56.3
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.7e-92 342.8 299 60.5
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.3e-91 340.5 303 58.7
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 5.0e-91 338.6 295 59.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.1e-90 337.4 305 58.4
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.9e-90 336.7 270 62.2
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-89 333.6 344 54.7
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 2.1e-89 333.2 304 57.2
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 2.8e-89 332.8 306 56.9
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 2.8e-89 332.8 239 69.0
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 3.0e-88 329.3 303 57.1
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.0e-88 329.3 293 59.4
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 8.9e-88 327.8 296 58.1
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.2e-87 327.4 255 66.3
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 1.5e-87 327.0 295 57.3
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 2.6e-87 326.2 266 61.3
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.4e-87 325.9 333 52.6
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 5.7e-87 325.1 246 62.6
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 5.7e-87 325.1 279 63.4
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 7.5e-87 324.7 334 55.1
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 9.8e-87 324.3 240 65.0
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 9.8e-87 324.3 295 58.0
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.9e-86 322.8 297 59.6
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 3.7e-86 322.4 284 58.5
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 6.4e-86 321.6 275 60.7
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 8.3e-86 321.2 306 56.2
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 8.3e-86 321.2 320 54.4
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.1e-85 320.9 264 59.5
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.1e-85 320.9 302 57.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.1e-85 320.9 235 66.0
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-85 320.9 268 59.3
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.4e-85 319.7 298 58.7
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.1e-85 318.9 284 58.5
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 5.4e-85 318.5 238 64.3
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 9.2e-85 317.8 319 55.8
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.6e-84 317.0 171 92.4
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 5.9e-84 315.1 306 55.6
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 5.9e-84 315.1 263 63.1
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.0e-83 314.3 326 54.3
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.3e-83 313.2 284 56.0
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 6.6e-83 311.6 279 59.9
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.5e-82 310.5 288 55.9
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 5.6e-82 308.5 284 56.0
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 9.5e-82 307.8 278 56.5
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 9.5e-82 307.8 284 55.3
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 9.5e-82 307.8 236 62.3
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.0e-80 302.4 243 62.1
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 6.8e-80 301.6 213 68.1
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 2.6e-79 299.7 304 56.2
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 9.8e-79 297.7 266 59.4
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 9.8e-79 297.7 266 59.4
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.3e-78 297.4 362 49.4
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 3.7e-78 295.8 287 54.7
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 8.3e-78 294.7 293 54.9
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 9.2e-77 291.2 308 53.6
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 7.8e-76 288.1 299 54.5
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.1e-74 284.3 230 59.1
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 4.3e-74 282.3 323 51.1
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 4.3e-74 282.3 296 53.4
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 4.3e-74 282.3 233 59.2
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 1.2e-73 280.8 280 55.7
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 1.2e-73 280.8 280 55.7
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 1.2e-73 280.8 280 55.7
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.0e-72 275.8 289 53.6
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 8.9e-72 274.6 241 61.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.4e-69 267.3 281 52.3
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 6.0e-68 261.9 245 54.3
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 5.1e-67 258.8 239 60.3
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 5.8e-63 245.4 220 56.8
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.3e-62 244.2 234 51.3
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-61 240.7 181 64.1
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 4.1e-61 239.2 452 37.4
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.7e-59 233.8 250 54.4
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 8.1e-57 224.9 238 49.2
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 4.0e-56 222.6 229 49.8
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 3.5e-52 209.5 195 56.9
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.1e-50 204.5 231 47.2
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 1.0e-43 181.4 179 55.9
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.3e-41 174.5 161 54.0
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 1.7e-38 164.1 172 57.0
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 4.9e-38 162.5 116 68.1
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.9e-37 160.6 151 49.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 4.2e-37 159.5 234 41.0
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.8e-35 154.1 115 61.7
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.3e-35 153.7 136 58.8
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 9.0e-32 141.7 151 49.0
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 7.6e-31 138.7 98 65.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 2.5e-29 133.7 88 69.3
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 3.2e-29 133.3 98 67.3
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 7.1e-29 132.1 75 77.3
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 5.3e-24 115.9 82 68.3
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 9.0e-24 115.2 75 73.3
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 9.0e-24 115.2 75 73.3
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 7.6e-23 112.1 67 77.6
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 3.8e-22 109.8 115 50.4
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 3.7e-17 93.2 108 51.9
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 4.8e-17 92.8 138 40.6
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 9.1e-16 88.6 62 64.5
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 2.9e-14 83.6 75 56.0
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 6.5e-14 82.4 64 67.2
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 8.5e-14 82.0 108 40.7
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.1e-13 81.6 72 56.9
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 7.2e-13 79.0 44 75.0
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 1.6e-12 77.8 44 86.4
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 1.6e-12 77.8 44 86.4
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.1e-12 77.4 46 73.9
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.2e-09 67.4 81 48.1
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.7e-09 66.6 191 28.3
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 7.0e-08 62.4 195 27.7
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 1.5e-07 61.2 106 40.6
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.5e-07 61.2 197 28.9
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.8e-06 56.6 256 26.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.8e-06 56.6 256 26.2
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 5.0e-06 56.2 189 28.0


User provided reference genes

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