Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 1.6e-222 775.8 392 100.0
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 1.6e-222 775.8 392 100.0
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 1.6e-222 775.8 392 100.0
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 1.1e-218 763.1 392 98.5
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 2.0e-217 758.8 392 97.4
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 5.5e-207 724.2 392 91.8
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 4.5e-193 677.9 397 86.6
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 3.8e-192 674.9 397 84.6
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 1.9e-191 672.5 397 84.9
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 2.3e-189 665.6 397 83.6
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 6.8e-189 664.1 397 83.1
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 8.0e-182 640.6 399 81.0
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 6.4e-171 604.4 397 77.3
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 8.6e-152 540.8 395 70.1
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 6.0e-145 518.1 399 67.7
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 3.3e-135 485.7 399 62.7
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 1.1e-130 470.7 399 61.4
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 2.1e-129 466.5 395 62.0
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 6.0e-129 464.9 399 61.4
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 7.9e-129 464.5 385 60.8
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 2.3e-128 463.0 396 62.9
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 3.0e-128 462.6 398 61.1
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 3.0e-128 462.6 384 60.7
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 3.3e-127 459.1 396 62.6
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 3.3e-127 459.1 400 61.5
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 2.1e-126 456.4 394 61.4
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 2.8e-126 456.1 405 60.5
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 6.2e-126 454.9 400 62.2
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 1.8e-125 453.4 402 59.0
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 4.0e-125 452.2 398 60.3
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 5.3e-125 451.8 383 60.1
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 1.2e-124 450.7 395 60.3
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 2.6e-124 449.5 395 58.2
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 3.4e-124 449.1 394 60.7
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 5.8e-124 448.4 396 58.1
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 9.9e-124 447.6 395 59.5
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 4.9e-123 445.3 404 58.9
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 1.1e-122 444.1 412 58.0
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 2.4e-122 443.0 400 59.5
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 2.4e-122 443.0 394 60.2
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 1.2e-121 440.7 401 58.6
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 1.6e-121 440.3 407 57.5
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 2.7e-121 439.5 404 57.7
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 4.6e-121 438.7 395 56.2
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 4.6e-121 438.7 418 56.5
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 2.3e-120 436.4 404 58.9
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 1.5e-119 433.7 339 65.5
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 8.1e-118 427.9 396 59.3
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 4.0e-117 425.6 397 58.9
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 5.3e-117 425.2 395 58.7
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 2.6e-116 422.9 383 59.3
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 7.6e-116 421.4 385 57.1
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 2.2e-115 419.9 400 55.8
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 8.4e-115 417.9 398 55.5
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 1.4e-114 417.2 380 56.6
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 2.5e-114 416.4 396 58.6
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 3.2e-114 416.0 405 54.3
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 9.3e-114 414.5 405 56.0
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 1.2e-113 414.1 401 53.6
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 6.0e-113 411.8 333 63.1
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 1.3e-112 410.6 400 54.2
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 6.7e-112 408.3 320 65.3
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 8.7e-112 407.9 382 57.1
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 1.9e-111 406.8 387 54.8
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 2.5e-111 406.4 325 59.7
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 3.3e-111 406.0 363 58.7
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 3.3e-111 406.0 374 57.8
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 7.4e-111 404.8 404 55.0
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 9.6e-111 404.4 406 55.2
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 1.3e-110 404.1 379 54.6
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.4e-109 400.6 288 65.3
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 2.4e-109 399.8 376 55.6
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 3.1e-109 399.4 386 58.3
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 5.3e-109 398.7 372 57.0
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 2.6e-108 396.4 372 58.1
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 5.9e-108 395.2 274 67.5
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 1.3e-107 394.0 376 55.1
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 2.2e-107 393.3 314 64.6
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 2.9e-107 392.9 406 55.9
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 5.5e-106 388.7 375 52.5
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 5.5e-106 388.7 406 55.7
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 7.2e-106 388.3 245 73.9
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 2.8e-102 376.3 293 64.2
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 3.7e-102 375.9 371 56.3
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 1.7e-99 367.1 314 57.3
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 1.7e-99 367.1 241 71.4
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 2.2e-99 366.7 289 61.9
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 2.3e-96 356.7 311 55.6
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 2.3e-96 356.7 406 49.8
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 7.4e-95 351.7 323 59.4
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 1.4e-93 347.4 387 48.3
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 1.8e-93 347.1 397 49.1
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 3.0e-88 329.7 215 71.6
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 2.2e-83 313.5 396 48.2
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 6.1e-81 305.4 299 56.2
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 2.8e-65 253.4 396 42.2
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 2.7e-60 236.9 148 72.3
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 2.3e-59 233.8 400 38.8
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 1.8e-56 224.2 131 82.4
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 1.8e-56 224.2 131 82.4
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 2.5e-50 203.8 304 37.5
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 4.0e-48 196.4 157 66.2
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 8.9e-48 195.3 290 41.0
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 5.0e-43 179.5 298 36.6
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 3.3e-42 176.8 190 53.2
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 2.8e-41 173.7 272 37.9
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 1.4e-37 161.4 139 60.4
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 2.7e-36 157.1 119 64.7
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 1.4e-32 144.8 246 37.8
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 3.8e-30 136.7 96 70.8
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 3.5e-28 130.2 198 48.0
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 1.3e-17 95.1 112 46.4
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 8.1e-17 92.4 94 60.6
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 6.9e-16 89.4 92 59.8
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 8.7e-11 72.4 208 27.4
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 3.3e-10 70.5 209 30.6


User provided reference genes

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