Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 3.3e-50 201.4 104 100.0
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 3.3e-50 201.4 104 100.0
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 6.2e-49 197.2 104 98.1
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 6.2e-49 197.2 104 98.1
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 1.1e-48 196.4 104 97.1
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 2.3e-43 178.7 104 92.3
Sp6g21990 Schrenkiella parvula HOM05D007887 ORTHO05D009725 4.2e-37 157.9 105 81.0
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 1.8e-35 152.5 104 79.8
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 5.1e-35 151.0 104 81.7
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 1.1e-34 149.8 104 79.8
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 1.5e-34 149.4 104 80.8
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 3.3e-34 148.3 104 80.8
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 3.3e-34 148.3 104 79.8
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 3.3e-34 148.3 104 78.8
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 5.6e-34 147.5 102 79.4
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 9.6e-34 146.7 105 77.1
Thhalv10015113m.g Eutrema salsugineum HOM05D007887 ORTHO05D009725 9.6e-34 146.7 104 78.8
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 1.3e-33 146.4 104 76.9
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 1.3e-33 146.4 102 76.5
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 4.5e-31 137.9 104 72.1
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 7.1e-29 130.6 104 71.2
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 7.1e-29 130.6 104 67.3
BolC2t07271H Brassica oleracea HOM05D007887 ORTHO05D009725 3.0e-27 125.2 104 69.2
Carub.0008s2111 Capsella rubella HOM05D007887 ORTHO05D009725 6.7e-27 124.0 104 67.3
Aa31LG1G12450 Aethionema arabicum HOM05D007887 ORTHO05D009725 1.4e-24 116.3 106 66.0
C02p11740 Brassica napus HOM05D007887 ORTHO05D009725 4.2e-13 78.2 51 76.5
THA.LOC104799488 Tarenaya hassleriana HOM05D007887 ORTHO05D009725 3.6e-12 75.1 111 45.9
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 1.5e-10 69.7 100 50.0
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 2.5e-10 68.9 100 50.0
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 3.7e-09 65.1 96 46.9
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 1.1e-08 63.5 73 50.7
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 2.4e-08 62.4 101 44.6
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 6.9e-08 60.8 85 44.7
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 9.1e-08 60.5 93 46.2
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 2.0e-07 59.3 100 43.0
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 7.7e-07 57.4 100 40.0
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 7.7e-07 57.4 100 46.0
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 7.7e-07 57.4 99 41.4
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 7.7e-07 57.4 99 42.4
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 1.0e-06 57.0 100 41.0
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 1.0e-06 57.0 103 43.7
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 1.7e-06 56.2 99 37.4
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 2.9e-06 55.5 113 39.8
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 2.9e-06 55.5 100 37.0
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 3.8e-06 55.1 103 43.7
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 3.8e-06 55.1 101 42.6
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 3.8e-06 55.1 100 40.0
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 3.8e-06 55.1 102 43.1
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 6.5e-06 54.3 102 39.2
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 6.5e-06 54.3 103 42.7
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 6.5e-06 54.3 100 41.0
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 8.5e-06 53.9 40 62.5
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 8.5e-06 53.9 101 40.6


User provided reference genes

Program Settings