Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19570 Brassica carinata HOM05D000892 ORTHO05D092578 8.7e-72 273.5 133 100.0
Thhalv10013479m.g Eutrema salsugineum HOM05D000892 ORTHO05D000750 1.5e-10 70.1 175 33.1
Sp6g22850 Schrenkiella parvula HOM05D000892 ORTHO05D000750 1.9e-10 69.7 175 33.1
Carub.0006s2015 Capsella rubella HOM05D000892 ORTHO05D000750 2.5e-10 69.3 175 33.1
BcaC03g13880 Brassica carinata HOM05D000892 ORTHO05D000750 9.5e-10 67.4 175 32.6
BNapus_Darmor_BZH_scaffold_38p00680 Brassica napus HOM05D000892 ORTHO05D000750 9.5e-10 67.4 175 32.6
C02p10840 Brassica napus HOM05D000892 ORTHO05D000750 9.5e-10 67.4 175 32.6
BolC2t07155H Brassica oleracea HOM05D000892 ORTHO05D000750 9.5e-10 67.4 175 32.6
BraA02t05657Z Brassica rapa HOM05D000892 ORTHO05D000750 9.5e-10 67.4 175 32.6
BcaB05g22728 Brassica carinata HOM05D000892 ORTHO05D000750 2.1e-09 66.2 175 32.0
AL6G33420 Arabidopsis lyrata HOM05D000892 ORTHO05D000750 2.8e-09 65.9 175 32.6
AT5G22400 Arabidopsis thaliana HOM05D000892 ORTHO05D000750 2.8e-09 65.9 175 32.6
CiPaw.13G134800 Carya illinoinensis HOM05D000892 ORTHO05D000750 2.3e-08 62.8 41 75.6
CARHR191130 Cardamine hirsuta HOM05D000892 ORTHO05D000750 3.1e-08 62.4 36 86.1
Cfa010004 Carpinus fangiana HOM05D000892 ORTHO05D000750 3.1e-08 62.4 41 75.6
Haze_23363 Corylus avellana HOM05D000892 ORTHO05D000750 3.1e-08 62.4 41 75.6
QL01p012113 Quercus lobata HOM05D000892 ORTHO05D000750 6.8e-08 61.2 36 83.3
TWI31G0917 Tripterygium wilfordii HOM05D000892 ORTHO05D000750 8.9e-08 60.8 41 75.6
THA.LOC104814784 Tarenaya hassleriana HOM05D000892 ORTHO05D000750 1.2e-07 60.5 175 29.7
CDE04G2466 Ceratophyllum demersum HOM05D000892 ORTHO05D000750 2.0e-07 59.7 125 33.6
Gohir.A09G095900 Gossypium hirsutum HOM05D000892 ORTHO05D000750 4.4e-07 58.5 36 80.6
Gohir.D09G095600 Gossypium hirsutum HOM05D000892 ORTHO05D000750 4.4e-07 58.5 36 80.6
Gorai.006G112300 Gossypium raimondii HOM05D000892 ORTHO05D000750 4.4e-07 58.5 36 80.6
Nn6g34856 Nelumbo nucifera HOM05D000892 ORTHO05D000750 5.8e-07 58.2 41 70.7
TWI79G0474 Tripterygium wilfordii HOM05D000892 ORTHO05D000750 5.8e-07 58.2 41 70.7
Prupe.6G132400 Prunus persica HOM05D000892 ORTHO05D000750 9.8e-07 57.4 41 70.7
GSVIVG01036109001 Vitis vinifera HOM05D000892 ORTHO05D000750 9.8e-07 57.4 41 70.7
CDE08G1061 Ceratophyllum demersum HOM05D000892 ORTHO05D000750 1.3e-06 57.0 41 68.3
Peaxi162Scf00767g00413 Petunia axillaris HOM05D000892 ORTHO05D000750 1.7e-06 56.6 41 65.9
Eucgr.J00501 Eucalyptus grandis HOM05D000892 ORTHO05D000750 2.2e-06 56.2 41 68.3
PSO339G6583 Papaver somniferum HOM05D000892 ORTHO05D000750 2.2e-06 56.2 41 63.4
PSO384G3634 Papaver somniferum HOM05D000892 ORTHO05D000750 2.2e-06 56.2 41 63.4
Potri.006G211200 Populus trichocarpa HOM05D000892 ORTHO05D000750 2.2e-06 56.2 41 68.3
HPP92_009769 Vanilla planifolia HOM05D000892 ORTHO05D012816 2.2e-06 56.2 80 47.5
Ciclev10028229m.g Citrus clementina HOM05D000892 ORTHO05D000750 2.9e-06 55.8 36 75.0
Rhsim13G0112200 Rhododendron simsii HOM05D000892 ORTHO05D000750 2.9e-06 55.8 41 68.3
Ah.08g215650 Amaranthus hybridus HOM05D000892 ORTHO05D000750 4.9e-06 55.1 36 72.2
EL10Ac7g15834 Beta vulgaris HOM05D000892 ORTHO05D000750 4.9e-06 55.1 36 72.2
Eucgr.B03841 Eucalyptus grandis HOM05D000892 ORTHO05D000750 4.9e-06 55.1 41 68.3
Oeu047857.1 Olea europaea HOM05D000892 ORTHO05D000750 4.9e-06 55.1 41 63.4
Potri.016G078200 Populus trichocarpa HOM05D000892 ORTHO05D000750 4.9e-06 55.1 41 65.9
Sabra06G0162800 Salix brachista HOM05D000892 ORTHO05D000750 4.9e-06 55.1 41 65.9
Atru.chr3.3213 Acer truncatum HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 68.3
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 6.4e-06 54.7 41 68.3
CAN.G1524.6 Capsicum annuum HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 68.3
Ca_01656_v3 Cicer arietinum L. HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 65.9
Migut.N02486 Erythranthe guttata HOM05D000892 ORTHO05D000750 6.4e-06 54.7 36 75.0
MD03G1274900 Malus domestica HOM05D000892 ORTHO05D000750 6.4e-06 54.7 36 72.2
MD11G1166500 Malus domestica HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 68.3
Manes.11G162500 Manihot esculenta HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 68.3
Nitab4.5_0006738g0050 Nicotiana tabacum HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 65.9
RcHm_v2.0_Chr3g0474261 Rosa chinensis HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 68.3
Thecc.09G281700 Theobroma cacao HOM05D000892 ORTHO05D000750 6.4e-06 54.7 36 75.0
TAR633G1915 Trochodendron aralioides HOM05D000892 ORTHO05D000750 6.4e-06 54.7 41 63.4
Cpa.g.sc195.6 Carica papaya HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 68.3
Cpa.g.sc5.2 Carica papaya HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 68.3
CDE06G0225 Ceratophyllum demersum HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9
COL.COLO4_06222 Corchorus olitorius HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9
Glyma.12G089900 Glycine max HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 68.3
Nitab4.5_0000307g0190 Nicotiana tabacum HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9
Nitab4.5_0000755g0030 Nicotiana tabacum HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 63.4
Peaxi162Scf00040g00112 Petunia axillaris HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9
RcHm_v2.0_Chr5g0045671 Rosa chinensis HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9
RcHm_v2.0_Chr5g0046331 Rosa chinensis HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9
vmacro03321 Vaccinium macrocarpon HOM05D000892 ORTHO05D000750 8.3e-06 54.3 41 65.9


User provided reference genes

Program Settings