Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 1.4e-40 169.1 81 100.0
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 1.4e-40 169.1 81 100.0
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 1.4e-40 169.1 81 100.0
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 1.0e-38 162.9 81 96.3
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 8.6e-38 159.8 81 95.1
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 1.5e-37 159.1 81 93.8
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 5.2e-35 150.6 82 90.2
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 6.8e-35 150.2 82 90.2
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 2.0e-34 148.7 82 89.0
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 9.8e-34 146.4 82 87.8
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 2.2e-33 145.2 82 87.8
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 1.6e-28 129.0 81 75.3
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 2.1e-28 128.6 81 74.1
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 2.3e-27 125.2 81 67.9
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 3.0e-27 124.8 81 72.8
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 4.0e-27 124.4 81 69.1
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 5.2e-27 124.0 81 69.1
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 8.9e-27 123.2 81 69.1
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 1.2e-26 122.9 81 71.6
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 3.4e-26 121.3 81 69.1
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 5.7e-26 120.6 81 71.6
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 7.5e-26 120.2 81 71.6
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.3e-25 119.4 81 66.7
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 1.3e-25 119.4 81 65.4
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 69.1
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 66.7
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 2.2e-25 118.6 83 66.3
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 2.9e-25 118.2 81 69.1
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 2.9e-25 118.2 81 67.9
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.7e-25 117.9 81 64.2
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 3.7e-25 117.9 81 66.7
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 4.9e-25 117.5 81 69.1
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 8.3e-25 116.7 81 63.0
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 8.3e-25 116.7 81 66.7
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 8.3e-25 116.7 80 66.2
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 1.8e-24 115.5 83 67.5
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.8e-24 115.5 81 66.7
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 3.2e-24 114.8 81 65.4
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 3.2e-24 114.8 81 66.7
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 3.2e-24 114.8 86 64.0
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 3.2e-24 114.8 81 64.2
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 3.2e-24 114.8 81 64.2
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 4.1e-24 114.4 81 65.4
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 4.1e-24 114.4 81 63.0
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 7.0e-24 113.6 72 69.4
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 9.2e-24 113.2 81 63.0
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 9.2e-24 113.2 67 73.1
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 1.2e-23 112.8 80 61.2
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.2e-23 112.8 81 65.4
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 2.7e-23 111.7 81 64.2
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 2.7e-23 111.7 81 61.7
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 2.7e-23 111.7 81 61.7
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 2.7e-23 111.7 81 63.0
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 5.9e-23 110.5 81 65.4
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 7.8e-23 110.2 81 61.7
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 7.8e-23 110.2 79 63.3
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 7.8e-23 110.2 89 59.6
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 7.8e-23 110.2 86 57.0
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 1.3e-22 109.4 81 58.0
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 1.7e-22 109.0 83 60.2
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 1.7e-22 109.0 81 61.7
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.7e-22 109.0 85 58.8
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 3.0e-22 108.2 82 61.0
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 3.0e-22 108.2 82 61.0
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 3.9e-22 107.8 79 62.0
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 3.9e-22 107.8 86 59.3
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 5.0e-22 107.5 82 62.2
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 6.6e-22 107.1 81 60.5
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 8.6e-22 106.7 88 63.6
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 8.6e-22 106.7 81 63.0
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 8.6e-22 106.7 76 64.5
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 8.6e-22 106.7 85 60.0
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 8.6e-22 106.7 81 58.0
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 1.1e-21 106.3 86 59.3
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 1.1e-21 106.3 86 59.3
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 1.1e-21 106.3 86 59.3
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 1.9e-21 105.5 81 60.5
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 3.3e-21 104.8 87 57.5
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 5.6e-21 104.0 85 58.8
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 5.6e-21 104.0 85 58.8
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 5.6e-21 104.0 85 60.0
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 7.3e-21 103.6 85 57.6
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 3.6e-20 101.3 81 60.5
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 4.7e-20 100.9 81 55.6
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 2.3e-19 98.6 81 58.0
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 1.7e-17 92.4 80 50.0
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 1.1e-16 89.7 81 49.4
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 7.0e-16 87.0 66 59.1
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 4.1e-08 61.2 70 45.7


User provided reference genes

Program Settings