Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19537 Brassica carinata HOM05D001091 ORTHO05D015841 9.5e-77 290.0 141 100.0
C09p54650 Brassica napus HOM05D001091 ORTHO05D001020 9.5e-77 290.0 141 100.0
A10p18710 Brassica napus HOM05D001091 ORTHO05D001020 1.2e-74 283.1 141 97.2
BcaB08g36457 Brassica carinata HOM05D001091 ORTHO05D001020 3.0e-70 268.5 139 92.8
BolC9t58330H Brassica oleracea HOM05D001091 ORTHO05D001020 5.6e-69 264.2 181 76.8
Thhalv10012650m.g Eutrema salsugineum HOM05D001091 ORTHO05D001020 1.1e-67 260.0 141 88.7
BraA10t43951Z Brassica rapa HOM05D001091 ORTHO05D001020 3.1e-67 258.5 182 74.7
Sp6g23160 Schrenkiella parvula HOM05D001091 ORTHO05D001020 5.2e-67 257.7 141 88.7
BcaNung07296 Brassica carinata HOM05D001091 ORTHO05D001020 2.0e-66 255.8 149 86.6
Carub.0006s1967 Capsella rubella HOM05D001091 ORTHO05D001020 5.8e-66 254.2 141 85.8
CARHR191500 Cardamine hirsuta HOM05D001091 ORTHO05D001020 7.6e-66 253.8 141 85.8
AL6G32990 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 1.7e-65 252.7 141 85.8
A03p10540 Brassica napus HOM05D001091 ORTHO05D001020 1.9e-64 249.2 143 86.7
BraA03t10366Z Brassica rapa HOM05D001091 ORTHO05D001020 1.9e-64 249.2 143 86.7
C03p12130 Brassica napus HOM05D001091 ORTHO05D001020 1.2e-63 246.5 143 86.0
Aa31LG1G13370 Aethionema arabicum HOM05D001091 ORTHO05D001020 7.8e-63 243.8 141 85.1
BolC3t13686H Brassica oleracea HOM05D001091 ORTHO05D001020 3.0e-62 241.9 144 85.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.8e-60 235.3 141 80.1
AT5G22030 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 6.9e-59 230.7 172 70.3
BcaB01g04748 Brassica carinata HOM05D001091 ORTHO05D001020 5.8e-58 227.6 145 80.0
THA.LOC104799571 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.2e-57 225.7 141 78.0
BcaC01g06610 Brassica carinata HOM05D001091 ORTHO05D001020 1.4e-48 196.4 114 85.1
COL.COLO4_00161 Corchorus olitorius HOM05D001091 ORTHO05D001020 1.8e-43 179.5 140 65.0
Thecc.09G267800 Theobroma cacao HOM05D001091 ORTHO05D001020 1.5e-42 176.4 141 63.1
Duzib168G0067 Durio zibethinus HOM05D001091 ORTHO05D001020 3.4e-42 175.3 136 64.7
Duzib150G0688 Durio zibethinus HOM05D001091 ORTHO05D001020 4.9e-41 171.4 137 62.0
Gorai.006G117900 Gossypium raimondii HOM05D001091 ORTHO05D001020 6.5e-41 171.0 147 60.5
Gohir.D09G100500 Gossypium hirsutum HOM05D001091 ORTHO05D001020 1.1e-40 170.2 146 60.3
Gohir.A09G101100 Gossypium hirsutum HOM05D001091 ORTHO05D001020 1.4e-40 169.9 147 59.9
Ciclev10027791m.g Citrus clementina HOM05D001091 ORTHO05D001020 1.9e-40 169.5 147 59.9
Atru.chr3.3075 Acer truncatum HOM05D001091 ORTHO05D001020 5.5e-40 167.9 131 63.4
Atru.chr3.3090 Acer truncatum HOM05D001091 ORTHO05D009271 5.5e-40 167.9 131 63.4
Ah.08g222100 Amaranthus hybridus HOM05D001091 ORTHO05D001020 3.5e-39 165.2 141 61.0
Manes.11G103600 Manihot esculenta HOM05D001091 ORTHO05D001020 3.5e-39 165.2 136 62.5
TWI31G0595 Tripterygium wilfordii HOM05D001091 ORTHO05D001020 3.5e-39 165.2 143 60.8
PGR119G1581 Punica granatum HOM05D001091 ORTHO05D001020 6.0e-39 164.5 135 59.3
Hma1.2p1_0101F.1_g049670 Hydrangea macrophylla HOM05D001091 ORTHO05D001020 7.9e-39 164.1 141 56.7
Sabra16G0128400 Salix brachista HOM05D001091 ORTHO05D001020 7.9e-39 164.1 137 62.0
TWI79G0355 Tripterygium wilfordii HOM05D001091 ORTHO05D001020 1.3e-38 163.3 143 60.1
EL10Ac7g16275 Beta vulgaris HOM05D001091 ORTHO05D001020 1.8e-38 162.9 141 59.6
MD03G1159600 Malus domestica HOM05D001091 ORTHO05D001020 3.9e-38 161.8 139 57.6
Glyma.13G311300 Glycine max HOM05D001091 ORTHO05D001020 1.1e-37 160.2 139 59.0
MD11G1174900 Malus domestica HOM05D001091 ORTHO05D001020 1.9e-37 159.5 139 58.3
Potri.001G214800 Populus trichocarpa HOM05D001091 ORTHO05D001020 2.5e-37 159.1 136 60.3
Phvul.005G117700 Phaseolus vulgaris HOM05D001091 ORTHO05D001020 4.3e-37 158.3 135 60.0
Thhalv10027354m.g Eutrema salsugineum HOM05D001091 ORTHO05D015841 5.7e-37 157.9 145 57.9
Lj3g0006295 Lotus japonicus HOM05D001091 ORTHO05D001020 1.3e-36 156.8 141 56.7
Glyma.12G190400 Glycine max HOM05D001091 ORTHO05D001020 1.6e-36 156.4 136 59.6
Prupe.6G147300 Prunus persica HOM05D001091 ORTHO05D001020 1.6e-36 156.4 140 53.6
arahy.Tifrunner.gnm1.ann1.RIT83U Arachis hypogaea HOM05D001091 ORTHO05D001020 2.1e-36 156.0 142 55.6
arahy.Tifrunner.gnm1.ann1.X1RCBJ Arachis hypogaea HOM05D001091 ORTHO05D001020 2.1e-36 156.0 142 55.6
FAN11G0955 Fragaria x ananassa HOM05D001091 ORTHO05D001020 3.7e-36 155.2 144 55.6
VMungo1080G0672 Vigna mungo HOM05D001091 ORTHO05D001020 6.3e-36 154.5 135 59.3
TPR.G4164 Trifolium pratense HOM05D001091 ORTHO05D001020 8.2e-36 154.1 141 55.3
FvH4_3g26140 Fragaria vesca HOM05D001091 ORTHO05D001020 2.4e-35 152.5 144 54.9
AUR62001573 Chenopodium quinoa HOM05D001091 ORTHO05D001020 3.1e-35 152.1 146 54.8
FAN21G3893 Fragaria x ananassa HOM05D001091 ORTHO05D001020 6.9e-35 151.0 144 54.9
Lj2C949G1 Lonicera japonica HOM05D001091 ORTHO05D001020 1.2e-34 150.2 149 55.0
RcHm_v2.0_Chr5g0049121 Rosa chinensis HOM05D001091 ORTHO05D001020 1.5e-34 149.8 141 54.6
Psat5g262560 Pisum sativum HOM05D001091 ORTHO05D001020 2.0e-34 149.4 135 57.0
ClCG02G022500 Citrullus lanatus HOM05D001091 ORTHO05D001020 2.6e-34 149.1 135 53.3
FAN16G2369 Fragaria x ananassa HOM05D001091 ORTHO05D001020 2.6e-34 149.1 144 54.2
AUR62020212 Chenopodium quinoa HOM05D001091 ORTHO05D001020 4.5e-34 148.3 149 54.4
Eucgr.J00586 Eucalyptus grandis HOM05D001091 ORTHO05D001020 5.9e-34 147.9 137 55.5
FAN25G1894 Fragaria x ananassa HOM05D001091 ORTHO05D001020 5.9e-34 147.9 144 54.2
Rhsim13G0198100 Rhododendron simsii HOM05D001091 ORTHO05D001020 5.9e-34 147.9 138 54.3
Sed0022355 Sechium edule HOM05D001091 ORTHO05D001020 5.9e-34 147.9 135 54.1
MELO3C014526.2 Cucumis melo HOM05D001091 ORTHO05D001020 7.6e-34 147.5 138 51.4
Medtr2g087710 Medicago truncatula HOM05D001091 ORTHO05D001020 1.0e-33 147.1 139 54.7
arahy.Tifrunner.gnm1.ann1.KRDC8H Arachis hypogaea HOM05D001091 ORTHO05D001020 1.3e-33 146.7 135 54.8
GSVIVG01037531001 Vitis vinifera HOM05D001091 ORTHO05D001020 1.3e-33 146.7 133 54.9
arahy.Tifrunner.gnm1.ann1.ZKTD7I Arachis hypogaea HOM05D001091 ORTHO05D001020 1.7e-33 146.4 123 57.7
Cfa010206 Carpinus fangiana HOM05D001091 ORTHO05D001020 2.2e-33 146.0 136 56.6
vmacro04051 Vaccinium macrocarpon HOM05D001091 ORTHO05D001020 2.2e-33 146.0 138 53.6
Ca_01624_v3 Cicer arietinum L. HOM05D001091 ORTHO05D001020 3.8e-33 145.2 135 56.3
CsaV3_6G038640 Cucumis sativus L. HOM05D001091 ORTHO05D001020 5.0e-33 144.8 138 51.4
CiPaw.13G126800 Carya illinoinensis HOM05D001091 ORTHO05D001020 8.5e-33 144.1 135 56.3
TAR633G1177 Trochodendron aralioides HOM05D001091 ORTHO05D001020 1.1e-32 143.7 135 52.6
Lalb_Chr01g0005811 Lupinus albus HOM05D001091 ORTHO05D001020 1.9e-32 142.9 120 60.8
Sc21g0006730 Simmondsia chinensis HOM05D001091 ORTHO05D001020 2.5e-32 142.5 149 53.0
Lalb_Chr19g0136151 Lupinus albus HOM05D001091 ORTHO05D001020 3.2e-32 142.1 120 58.3
Nitab4.5_0000875g0120 Nicotiana tabacum HOM05D001091 ORTHO05D001020 7.2e-32 141.0 138 53.6
Hund18804 Selenicereus undatus HOM05D001091 ORTHO05D001020 7.2e-32 141.0 145 53.8
MSTRG.18797 Avicennia marina HOM05D001091 ORTHO05D001020 1.6e-31 139.8 140 49.3
Nitab4.5_0003657g0030 Nicotiana tabacum HOM05D001091 ORTHO05D001020 1.6e-31 139.8 138 52.9
CSS0046714 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D015841 2.7e-31 139.0 139 51.8
MSTRG.21007 Avicennia marina HOM05D001091 ORTHO05D001020 1.3e-30 136.7 140 48.6
CAN.G1463.15 Capsicum annuum HOM05D001091 ORTHO05D001020 3.9e-30 135.2 139 54.0
Dinv18857 Davidia involucrata HOM05D001091 ORTHO05D001020 1.5e-29 133.3 108 60.2
QL01p019208 Quercus lobata HOM05D001091 ORTHO05D015841 1.5e-29 133.3 151 49.7
Nn6g34617 Nelumbo nucifera HOM05D001091 ORTHO05D001020 3.3e-29 132.1 135 48.1
Migut.D02381 Erythranthe guttata HOM05D001091 ORTHO05D001020 5.7e-29 131.3 120 51.7
Solyc06g073930.4 Solanum lycopersicum HOM05D001091 ORTHO05D001020 5.7e-29 131.3 136 52.9
Sopen06g030330 Solanum pennellii HOM05D001091 ORTHO05D001020 5.7e-29 131.3 136 52.9
SGA_v2.0_scaffold7G04006 Striga asiatica HOM05D001091 ORTHO05D001020 5.7e-29 131.3 142 46.5
Cc01_g07850 Coffea canephora HOM05D001091 ORTHO05D001020 1.3e-28 130.2 125 53.6
Cpa.g.sc103.29 Carica papaya HOM05D001091 ORTHO05D015841 2.8e-28 129.0 135 52.6
Aqoxy1G00611 Aquilegia oxysepala HOM05D001091 ORTHO05D001020 8.2e-28 127.5 140 47.1
CSS0019153 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D015841 1.8e-27 126.3 111 57.7
SalBow6G2883 Salvia bowleyana HOM05D001091 ORTHO05D001020 5.3e-27 124.8 124 51.6
TAR636G1693 Trochodendron aralioides HOM05D001091 ORTHO05D001020 6.9e-27 124.4 114 50.9
PSO339G5290 Papaver somniferum HOM05D001091 ORTHO05D001020 9.1e-27 124.0 142 47.9
PSO384G3742 Papaver somniferum HOM05D001091 ORTHO05D001020 9.1e-27 124.0 142 47.9
DCAR_006189 Daucus carota HOM05D001091 ORTHO05D001020 2.0e-26 122.9 142 46.5
Oeu048823.1 Olea europaea HOM05D001091 ORTHO05D001020 4.5e-26 121.7 125 49.6
Peaxi162Scf00098g00113 Petunia axillaris HOM05D001091 ORTHO05D001020 8.5e-25 117.5 120 51.7
unitig_899.g15383 Utricularia gibba HOM05D001091 ORTHO05D015841 3.2e-24 115.5 109 49.5
SHI25267 Sapria himalayana HOM05D001091 ORTHO05D001020 4.6e-23 111.7 162 43.8
Haze_23594 Corylus avellana HOM05D001091 ORTHO05D001020 5.7e-21 104.8 123 50.4
MBI05_g36783_MAGBIO Magnolia biondii HOM05D001091 ORTHO05D001020 8.2e-20 100.9 117 43.6
CDE10G0151 Ceratophyllum demersum HOM05D001091 ORTHO05D001020 1.1e-19 100.5 122 45.9
HPP92_028256 Vanilla planifolia HOM05D001091 ORTHO05D001020 2.4e-19 99.4 107 48.6
vmacro22680 Vaccinium macrocarpon HOM05D001091 ORTHO05D015841 3.1e-19 99.0 91 53.8
Lsat_1_v5_gn_2_35221 Lactuca sativa HOM05D001091 ORTHO05D001020 4.1e-19 98.6 156 39.7
ECA238G3615 Erigeron canadensis HOM05D001091 ORTHO05D001020 9.1e-19 97.4 163 40.5
CDE10G1029 Ceratophyllum demersum HOM05D001091 ORTHO05D001020 1.3e-17 93.6 122 42.6
HanXRQChr17g0561191 Helianthus annuus HOM05D001091 ORTHO05D001020 1.1e-16 90.5 137 41.6
ATR0697G235 Amborella trichopoda HOM05D001091 ORTHO05D001020 1.6e-15 86.7 139 40.3
GSVIVG01022581001 Vitis vinifera HOM05D001091 ORTHO05D015841 5.7e-13 78.2 94 44.7
Duzib128G1052 Durio zibethinus HOM05D001091 ORTHO05D001020 6.3e-12 74.7 117 35.0
Gohir.A09G132900 Gossypium hirsutum HOM05D001091 ORTHO05D001020 6.3e-12 74.7 119 36.1
Ciclev10012460m.g Citrus clementina HOM05D001091 ORTHO05D001020 2.4e-11 72.8 122 37.7
Hund10841 Selenicereus undatus HOM05D001091 ORTHO05D001020 5.3e-11 71.6 117 36.8
Thecc.05G108000 Theobroma cacao HOM05D001091 ORTHO05D001020 1.2e-10 70.5 115 34.8
Gohir.D09G129200 Gossypium hirsutum HOM05D001091 ORTHO05D001020 2.6e-10 69.3 119 34.5
Gorai.006G147900 Gossypium raimondii HOM05D001091 ORTHO05D001020 2.6e-10 69.3 119 34.5
ATR0585G129 Amborella trichopoda HOM05D001091 ORTHO05D015841 3.5e-10 68.9 112 37.5
COL.COLO4_29522 Corchorus olitorius HOM05D001091 ORTHO05D001020 5.9e-10 68.2 102 38.2
Cfa020062 Carpinus fangiana HOM05D001091 ORTHO05D001020 2.9e-09 65.9 131 31.3
Potri.006G201100 Populus trichocarpa HOM05D001091 ORTHO05D001020 8.5e-09 64.3 123 37.4
CSS0002029 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 1.9e-08 63.2 133 34.6
CSS0017286 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 1.9e-08 63.2 133 34.6
HanXRQChr02g0053321 Helianthus annuus HOM05D001091 ORTHO05D001020 1.9e-08 63.2 99 39.4
ECA233G5061 Erigeron canadensis HOM05D001091 ORTHO05D001020 2.5e-08 62.8 115 33.9
Manes.09G043300 Manihot esculenta HOM05D001091 ORTHO05D001020 2.5e-08 62.8 102 34.3
Sabra06G0154800 Salix brachista HOM05D001091 ORTHO05D001020 2.5e-08 62.8 125 34.4
Rhsim03G0059600 Rhododendron simsii HOM05D001091 ORTHO05D001020 7.2e-08 61.2 145 31.0
Atru.chr8.1306 Acer truncatum HOM05D001091 ORTHO05D001020 9.4e-08 60.8 109 38.5
Lsat_1_v5_gn_6_34761 Lactuca sativa HOM05D001091 ORTHO05D001020 1.2e-07 60.5 120 32.5
QL07p027131 Quercus lobata HOM05D001091 ORTHO05D001020 3.6e-07 58.9 90 38.9
Sed0027161 Sechium edule HOM05D001091 ORTHO05D001020 3.6e-07 58.9 124 33.1
ClCG10G018140 Citrullus lanatus HOM05D001091 ORTHO05D001020 6.1e-07 58.2 122 32.8
MELO3C009559.2 Cucumis melo HOM05D001091 ORTHO05D001020 6.1e-07 58.2 123 34.1
CsaV3_3G038160 Cucumis sativus L. HOM05D001091 ORTHO05D001020 6.1e-07 58.2 123 34.1
MSTRG.19332 Avicennia marina HOM05D001091 ORTHO05D001020 8.0e-07 57.8 106 37.7
PGR004G1296 Punica granatum HOM05D001091 ORTHO05D001020 2.3e-06 56.2 119 32.8
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 5.2e-06 55.1 101 36.6
Haze_20136 Corylus avellana HOM05D001091 ORTHO05D001020 5.2e-06 55.1 104 32.7
Migut.J00745 Erythranthe guttata HOM05D001091 ORTHO05D001020 5.2e-06 55.1 109 31.2


User provided reference genes

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