Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19526 Brassica carinata HOM05D004133 ORTHO05D004683 1.0e-27 126.7 101 100.0
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 1.0e-27 126.7 101 100.0
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 1.0e-27 126.7 101 100.0
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 1.0e-27 126.7 101 100.0
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 2.2e-27 125.6 101 99.0
C09p54680 Brassica napus HOM05D001689 ORTHO05D004683 3.2e-26 121.7 101 97.0
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 5.5e-26 120.9 101 97.0
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 9.4e-26 120.2 101 94.1
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 9.4e-26 120.2 101 94.1
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 1.2e-25 119.8 101 93.1
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 2.1e-25 119.0 101 92.1
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 3.6e-25 118.2 101 93.1
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 3.6e-25 118.2 101 93.1
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 7.9e-25 117.1 101 92.1
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 7.9e-25 117.1 101 92.1
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 2.3e-24 115.5 101 92.1
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 3.0e-24 115.2 101 90.1
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 3.9e-24 114.8 101 90.1
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 4.3e-23 111.3 101 88.1
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 1.5e-20 102.8 101 81.2
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 1.5e-20 102.8 101 81.2
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 1.5e-20 102.8 97 92.8
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 2.6e-20 102.1 101 85.1
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 1.0e-19 100.1 101 81.2
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 1.3e-19 99.8 101 80.2
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 1.3e-19 99.8 101 82.2
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 1.7e-19 99.4 101 79.2
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 1.7e-19 99.4 101 79.2
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 3.8e-19 98.2 101 79.2
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 3.8e-19 98.2 101 78.2
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 5.0e-19 97.8 100 81.0
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 6.5e-19 97.4 101 78.2
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 6.5e-19 97.4 101 78.2
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 8.5e-19 97.1 101 84.2
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 1.1e-18 96.7 101 72.3
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 1.1e-18 96.7 101 72.3
BolC2t07129H Brassica oleracea HOM05D004133 ORTHO05D004683 1.4e-18 96.3 101 88.1
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 1.4e-18 96.3 101 81.2
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 1.4e-18 96.3 101 81.2
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 1.4e-18 96.3 101 81.2
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 1.9e-18 95.9 101 78.2
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 1.9e-18 95.9 101 82.2
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 4.2e-18 94.7 101 78.2
Rhsim13G0198800 Rhododendron simsii HOM05D004133 ORTHO05D004683 4.2e-18 94.7 101 77.2
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 4.2e-18 94.7 101 77.2
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 4.2e-18 94.7 101 76.2
BcaC03g13851 Brassica carinata HOM05D004133 ORTHO05D004683 5.5e-18 94.4 101 76.2
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 9.4e-18 93.6 101 76.2
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 9.4e-18 93.6 101 75.2
Actinidia22457 Actinidia chinensis HOM05D004133 ORTHO05D004683 1.2e-17 93.2 101 81.2
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 1.2e-17 93.2 101 80.2
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 1.2e-17 93.2 101 79.2
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 2.7e-17 92.0 101 77.2
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 4.7e-17 91.3 101 68.3
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 7.9e-17 90.5 101 77.2
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 1.0e-16 90.1 101 79.2
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 1.4e-16 89.7 101 77.2
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 3.9e-16 88.2 55 80.0
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 5.1e-16 87.8 101 76.2
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 2.6e-15 85.5 101 77.2
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 2.6e-15 85.5 101 76.2
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 3.3e-15 85.1 101 74.3
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 3.3e-15 85.1 101 54.5
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 7.4e-15 84.0 101 69.3
TAR633G2810 Trochodendron aralioides HOM05D004133 ORTHO05D004683 1.7e-14 82.8 96 69.8
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.2e-14 82.4 101 72.3
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 2.2e-14 82.4 101 75.2
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 1.1e-13 80.1 96 77.1
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 1.8e-13 79.3 101 74.3
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 1.8e-13 79.3 101 75.2
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 3.1e-13 78.6 97 44.3
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 3.1e-13 78.6 101 71.3
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 7.0e-13 77.4 46 80.4
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 1.2e-12 76.6 100 72.0
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 1.2e-12 76.6 100 72.0
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 1.2e-12 76.6 96 72.9
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 2.0e-12 75.9 97 75.3
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 4.5e-12 74.7 101 70.3
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 4.5e-12 74.7 50 74.0
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 1.0e-11 73.6 102 73.5
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 1.3e-11 73.2 97 71.1
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 1.3e-11 73.2 101 71.3
MSTRG.12403 Avicennia marina HOM05D004133 ORTHO05D004683 1.7e-11 72.8 101 68.3
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 1.7e-11 72.8 101 66.3
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 5.0e-11 71.2 101 68.3
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 8.5e-11 70.5 96 66.7
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 1.1e-10 70.1 101 65.3
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 1.5e-10 69.7 99 70.7
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.5e-10 68.9 103 69.9
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 2.5e-10 68.9 101 67.3
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 3.2e-10 68.6 101 62.4
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 4.2e-10 68.2 103 68.9
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 5.5e-10 67.8 101 62.4
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 7.2e-10 67.4 101 50.5
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 7.2e-10 67.4 101 66.3
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 7.2e-10 67.4 103 68.9
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 9.4e-10 67.0 101 65.3
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.2e-09 66.6 103 68.9
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.2e-09 66.6 101 67.3
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.2e-09 66.6 101 67.3
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 1.6e-09 66.2 103 68.9
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 1.6e-09 66.2 101 64.4
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 2.1e-09 65.9 101 66.3
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 3.6e-09 65.1 103 66.0
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 3.6e-09 65.1 103 68.0
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 4.7e-09 64.7 101 59.4
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 6.1e-09 64.3 97 67.0
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 6.1e-09 64.3 97 67.0
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 1.4e-08 63.2 146 52.1
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 4.0e-08 61.6 36 80.6
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 6.7e-08 60.8 101 63.4
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 6.7e-08 60.8 51 56.9
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 1.5e-07 59.7 97 40.2
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 2.0e-07 59.3 101 63.4
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 4.4e-07 58.2 36 75.0
Dinv18869 Davidia involucrata HOM05D004133 ORTHO05D004683 4.4e-07 58.2 51 58.8
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 9.7e-07 57.0 36 77.8
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 1.7e-06 56.2 97 63.9
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 2.2e-06 55.8 32 81.2
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 2.2e-06 55.8 32 81.2
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 3.7e-06 55.1 34 70.6
RcHm_v2.0_Chr1g0344791 Rosa chinensis HOM05D004133 ORTHO05D004683 6.3e-06 54.3 38 71.1


User provided reference genes

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